BAC Information

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BAC

Clone NameMSMg01-466G16
Chromosome3 (Build37)
Map Location 77,804,938 - 77,805,364
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466G16.T7 (MSMg01no466_g16.b1)MSMg01-466G16.TJ (MSMg01no466_g16.g1)
ACCAG550368AG550369
length792780
length of high quality
(start - end)
395 (73 - 467)429 (78 - 506)
definitionCHROMAT_FILE: MSMg01no466_g16.b1 PHD_FILE: MSMg01no466_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:53 2005CHROMAT_FILE: MSMg01no466_g16.g1 PHD_FILE: MSMg01no466_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCNGGAATCTTTGTTTCTCCTCTGAGCCCTATTTTTTAATTGTGTGTACA
TAGCATGCATGTCCTTTGGAAGGAGCTACGGAGACAAAGTTTGGAGCTGA
GGTGAAAGGATGGACCATCCAGAGACTGCCCCACCATCCCATAATCAGCC
AACAAACAGACACTATTGCATACACCAACAAGATTTTACTGAAAGGACCC
TGATATAGCTGTCTCTTGTGAGGCTATGTCAGTGCCTGACAAATACAGAA
GTGGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCCCCAATGGAG
GAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGT
GGAACAACAATACAAACTGAGCAGTACCCCCAGAGCTCTTGTCTCTAGCT
GCATACGTAAGAGAAGATGGCCTAGTCATTGTGAAGAGAGGCCCTTGGCC
TTGCAAACTTTATATGGCCCAGTACAGGGGAACACCAGGGCCAAGAAGTG
GGAGTGGGTACGTTATGGCATCATTTCTTTTTCTTTCCTTTTCGCTCCTC
TTTCCACTTTACCACCTATAATGTGCTTTTAATTCCCACCCCCCTACCCT
CATTTTGTAATTTCGCTCGTCCCCTCTCTGCCGTCTTCCTGCTCGCTTTC
ATCTTTTTTCCTCGCGCTGCCCTCTCTTTTCCTTCTGTTTTTTCTCCAGT
TCTCTTTGTTCTACATCCTTTACCATTAATCCCTTTTTTACG
NTTAGCGATGACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTCTCCTCTTCTTGCATCTT
GTCTCCTTGCCTCTAGGGACATGGAAGTCCTTCCTGTTCTTTCTAACCAG
CAATTGGCCCATGGCTTTTTTACTGACAGATCAAGAGCCAATTGGGGAAC
AATACTGTAGCATCAGAACCACTCCTACCGACCATTACTAATCCCCATGA
CCCCAAATAGTCACTGATTCACTATGTCTTCCTTACTGTCCCAAGTCTAT
GTCATAGTATTTTCCTTCACATTATTTCCACTTCCCACTCTCCCTCCAGC
TCCTCCTCCTCCTCCTCTTCCTCCTTCTCTTTTTCCTTTTTTTCTTCTTC
TTCCACCCCTCTCACATCATGCATAACCAGTACTGTTCACATACTCTTTA
ATGCCTGGTCTTCTACTGAATTCTTTTTTTTTTTAACATGTATTTATTTA
TTTATTTATTTATTTATTCATTTACCCCCCCNNATCCCTCTCATCCCCTT
TCTCCTCCCTTATTTTTATTCATTACTACCTCTTCTCCTTATATTCTCCC
TTCTTTCTTTTTAATATAATCCTTATTTTTTCACCCCCTTTTTTCTCTAT
TCTAATTATATTATTCCCTTCCTCTATACATCTTATTAACTTCTATTTCC
TTCCCTTCCTTTTTTTTCCTCATTTTTCTCTCAACTTTTTCTTCTCTCCC
TCTCTATTTAACCCCCTTTTCTATACATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_g16.g1 MSMg01no466_g16.g1 CHROMAT_FILE:
MSMg01no466_g16.g1 PHD_FILE: MSMg01no466_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:53 2005
         (429 letters)



>mm_chr3_77804738_77805564
          Length = 827

 Score =  818 bits (423), Expect = 0.0
 Identities = 427/429 (99%), Gaps = 2/429 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctctcctcttcttgcatcttgtctccttgcctctagggacatggaagtccttcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctctcctcttcttgcatcttgtctccttgcctctagggacatggaagtccttcctgt 260

                                                                       
Query: 61  tctttctaaccagcaattggcccatggcttttttactgacagatcaagagccaattgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttctaaccagcaattggcccatggcttttttactgacagatcaagagccaattgggg 320

                                                                       
Query: 121 aacaatactgtagcatcagaaccactcctaccgaccattactaatccccatgaccccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaatactgtagcatcagaaccactcctaccgaccattactaatccccatgaccccaaa 380

                                                                       
Query: 181 tagtcactgattcactatgtcttccttactgtcccaagtctatgtcatagtattttcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtcactgattcactatgtcttccttactgtcccaagtctatgtcatagtattttcctt 440

                                                                       
Query: 241 cacattatttccacttcccactctccctccagctcctcctcctcctcctcttcctccttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacattatttccacttcccactctccctccagctcctcctcctcctcctcttcctccttc 500

                                                                       
Query: 301 tctttttcctttttttcttcttcttccacccctctcacatcatgcataaccagtactgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttttcctttttttcttcttcttccacccctctcacatcatgcataaccagtactgtt 560

                                                                       
Query: 361 cacatactctttaatgcctggtcttctactgaattctttttttttttaacatgtatttat 420
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 561 cacatactctttaatgcctggtcttctactgaattcttttttttt--aacatgtatttat 618

                    
Query: 421 ttatttatt 429
           |||||||||
Sbjct: 619 ttatttatt 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 827
Length adjustment: 9
Effective length of query: 420
Effective length of database: 818
Effective search space:   343560
Effective search space used:   343560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)