BAC Information

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BAC

Clone NameMSMg01-467A16
Chromosome3 (Build37)
Map Location 17,006,193 - 17,006,346
singlet/doubletsinglet
Overlap genenone
Upstream geneYthdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467A16.T7 (MSMg01no467_a16.b1)MSMg01-467A16.TJ (MSMg01no467_a16.g1)
ACCAG550847AG550848
length734814
length of high quality
(start - end)
537 (40 - 576)158 (71 - 228)
definitionCHROMAT_FILE: MSMg01no467_a16.b1 PHD_FILE: MSMg01no467_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:47 2005CHROMAT_FILE: MSMg01no467_a16.g1 PHD_FILE: MSMg01no467_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTGTTTATCCCTGTTTCTCATTTTTTAATAAGGTCATTTGGTTCTCTGGA
GTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAACTCTCTATCAG
ACGTAGGACTGATAAAGACCTTTTCCCGATCTGTTGGTTGCTGTTTTGTC
CCATTGACAGTGTCCTTTCCCATACAGAAGCTTTGAAATTTTATGAGGTT
CCATTTGTCAATTCTTGATCTTACAGCATAAGCCATTGGTGTGTTCAAGG
CTCTTTTCCACTTTCTCTTCTATTATTTCTTCTATTATTTCTCTTCTTGC
CCGTGTGTTCAAGGCTCTTTTCTACTTTCTCTTCTATTAGATTCAGTGTA
TATGGAGGTCCTTGATCCACTGGGACATGAGTGTTGTTCAAGGAGATAAG
AATGGATCAATTTGTACTCTTCTACATGTTGACCTCCAGTTGACCAAGCA
ATATTTGTGGAAAATGCTGTCTTTTTTTTCCCACTGTATGGTATGAACTC
CTTTGTCAAAGAACAAGTGACCATAGGTGTATGGGTTCATTTCTGGGTCT
TCAACTCTATTCCACTGATCTACCTGCCTGTTACTGTACCAATGCCACTA
AGTTTATATCACAATTGCTCTGTATTACTGCTGTAAGTCTAGGATAGCGA
TTCCTCTAAGTCTTATCTTTATGATAATATTTTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGACCATAATGGGAAAGGAAGCTTAACC
TGACTATCAAGCTCTTCCAGGGAACAAAGGTGGAGCTGCAGGGCTACAAG
TAAAATGTCAGGAACACCCAGAGTTGGGGGTGTATGTTGGGTGGCTGTTT
GGTTTGNAGATAGNCCTACTCCTGCTAATCTCAGGGAGAGATTCCCATGC
TTGGGGTACTGGCTGTTTTTGCGTTGCTTGACTCATGCTGTATGTATCTC
AGAGAAAGGATTTTTTTTTGTGCGAGTTGGCTAGATGATATCCACATTTG
CTTTTTTTTCTCACTTTATTTTTAGTGGGGGCTGGTGTCCCTGAGTTTTG
TTACTATCATTGCCCCCCCCCCTTTCTCGTTTTTTTTGCAATCCTTTCCT
TTTTTTCTCTCTTAATTTTTTCCCCTCCCCTCTCCTTTTTCTTTTTTTTT
CGGACCTCTCTTCTTACGTCTCTCCTTCTTCTTCATTTCCTCATCTTTCC
CCTGTTTTTTCTTCTTTTCTCCTTTTATGTCCCCTATATCCCTTCCATTT
TTTTTCTCTTCACATTTCGTTTTTTCTACTTTTTCCCTTTCCCTTTCCTT
TATATTTCCTACTACTTTTTACCTTACCCTTTCCCTCCCTTTTTTTTCGC
CCCTTTTCTTACCCCCTATACTCTCTTTATATTTTTTTTTCTCCTACCCG
CTTCTTTTTTCTTTTACTTCCTATTACTCTCTTATTTTCTTTTTTCTACT
TCCTCTTATATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_a16.g1 MSMg01no467_a16.g1 CHROMAT_FILE:
MSMg01no467_a16.g1 PHD_FILE: MSMg01no467_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:47 2005
         (158 letters)



>mm_chr3_17005993_17006546
          Length = 554

 Score =  275 bits (142), Expect = 1e-78
 Identities = 152/158 (96%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaccataatgggaaaggaagcttaacctgactatcaagctcttccagggaacaaagg 60
           |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 201 catgaccataatgggaaaggaagcttaacct----atcaagctcttccagggaacaaagg 256

                                                                       
Query: 61  tggagctgcagggctacaagtaaaatgtcaggaacacccagagttgggggtgtatgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tggagctgcagggctacaagtaaaatgtcaggaacacccagagttgggggtgtatgttgg 316

                                                 
Query: 121 gtggctgtttggtttgnagatagncctactcctgctaa 158
           |||||||||||||||| |||||| ||||||||||||||
Sbjct: 317 gtggctgtttggtttggagatagtcctactcctgctaa 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 554
Length adjustment: 8
Effective length of query: 150
Effective length of database: 546
Effective search space:    81900
Effective search space used:    81900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)