TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGAATCCGCGGA
ATTCACTATGTTTTCCCGACTGGCCTCAAACTTAGAGATCTGGCTTCTGG
CTACCTCTGCCTCCCAAGTACTAGGATTAAGGTGTGCACCCAGCCATATT
ATGAATCCCAAACTAATTATTGTCTTGTTCTCTGTATAACTCAGAAGGTT
TCCTTTTTTGTTGTTGTTGTTGACTTGCCTAGATAATTTTCATGTCTCTA
CTGGAAAAAACAGTCAACATCCATCACTGGATTTAGCTTGCAGGTACTTC
CAACTGGCTGGATCACTATTTGCTGGGAAAACCAGTGTTCTTTCCATGGC
CAATATCTTGAAGCAGGGTGAGTGCCTTGTTGTTGCTCTCCACAATTCTG
CTTATGGTGCTCATTCCATTTCATGTTGTTATCATAATTCCTCGCATTTC
TATCTGTCTTTATGTTCATCTGTTTACCAAGAATTTTAACTTAACATTTT
TGTTAAGGATAATAACAAAATAATTCTAATGATTTCAATTACTCTTATAA
ATGACTCTGAAGGGAAAACAGAGTTCTGATTACAGTTTAAGTCATTACTG
ATTTAAATAACTGAAAAATTCCATCACTTCCGATTAGATAATTTGATGTC
CATGTCTGCTGCTTGTTGGTGCCATTCTAACACGCTTATCGCGGGTTTTT
ATCCTCGTTACATTTGAGTCTTTTCTCGTTC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCAGGAATTCTTTGTCTAGCTCTGTACCTCGTTTTATT
AATAGCCTTATGGGATTTTCTGGAGTCTAGCTTCTTGAGTTCTTTGTATA
TATTGGATATTAGTTCCCTATCAGATTTATGATTGGTAAAGATCCTTTCC
AAATCTATTGGTGGCCTTTTTGTCTTATTCACAGTGTCTTTTGCCTTACA
GGAGCTTTGAAATTTTATGAGGTCCAATTTCTAGAATTTCAATCTTACAG
CACAAGCCATTGGTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCT
TCGATTGTTTTTCCCACTTTATCTTCTATAAGGTTCAATGTCTCTGGTTT
TATATGGAGTTCCTTGATCCAATTAGAACTGAGCTTTGTACAAGGACATA
ATAATCGATCAATTCGCATTCTTCTACATGATATCTGCCAGTTGTGCCAG
TACCATTTGTTGAAAATGTTGTCTTTACTCCACTGTATGATTTTACCACC
TTTGTCTTAGATCTAGTGATTATAGGTGTATGCCCTCATTTCCGTGTACC
CCTCTCTTTTCCATACCTCTATTTTGTTCGTCCCCTCGCTCTCTACTTTT
TTTCCTTTTTATCTTCTTTCGCTACTTATTCACTCTCTTTGTTTCCCCCC
CCTCTGCCGTCTTTTACTCCCATACCCTTTTCTTCCC

Query= MSMg01no467_c05.b1 MSMg01no467_c05.b1 CHROMAT_FILE:
MSMg01no467_c05.b1 PHD_FILE: MSMg01no467_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:54 2005
         (514 letters)



>mm_chr3_5190510_5191422
          Length = 913

 Score =  899 bits (465), Expect = 0.0
 Identities = 501/515 (97%), Gaps = 7/515 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcactatgttttcccgactggcctcaaacttagagatctggcttctggctacctc 62
           ||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggaattcactatgtaaaccagactggcctcaaacttagagatctggcttctggctacctc 747

                                                                       
Query: 63  tgcctcccaagtactaggattaaggtgtgcacccagccatattatgaatcccaaactaat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tgcctcccaagtactaggattaaggtgtgcacccagccatattatgaatcccaaactaat 687

                                                                       
Query: 123 tattgtcttgttctctgtataactcagaaggtttccttttttgttgttgttgttgacttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tattgtcttgttctctgtataactcagaaggtttccttttttgttgttgttgttgacttg 627

                                                                       
Query: 183 cctagataattttcatgtctctactggaaaaaacagtcaacatccatcactggatttagc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cctagataattttcatgtctctactggaaaaaacagtcaacatccatcactggatttagc 567

                                                                       
Query: 243 ttgcaggtacttccaactggctggatcact-atttgct--gggaaaaccagtgttctttc 299
           |||||| |||||||||||||||| |||||| |   |||  ||||||||||||||||||||
Sbjct: 566 ttgcagatacttccaactggctg-atcactga---gctctgggaaaaccagtgttctttc 511

                                                                       
Query: 300 catggccaatatcttgaagcagggtgagtgccttgttgttgctctccacaattctgctta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 catggccaatatcttgaagcagggtgagtgccttgttgttgctctccacaattctgctta 451

                                                                       
Query: 360 tggtgctcattccatttcatgttgttatcataattcctcgcatttctatctgtctttatg 419
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 450 tggtgctcattccatttcatgttgttatcataattcctcacatttctatctgtctttatg 391

                                                                       
Query: 420 ttcatctgtttaccaagaattttaacttaacatttttgttaaggataataacaaaataat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttcatctgtttaccaagaattttaacttaacatttttgttaaggataataacaaaataat 331

                                              
Query: 480 tctaatgatttcaattactcttataaatgactctg 514
           ||||||||||||||||||||||| |||||||||||
Sbjct: 330 tctaatgatttcaattactcttaaaaatgactctg 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space:   455112
Effective search space used:   455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)