BAC Information

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BAC

Clone NameMSMg01-467G19
Chromosome3 (Build37)
Map Location 72,723,753 - 72,724,088
singlet/doubletsinglet
Overlap gene2010204N08Rik
Upstream geneLOC100041459
Downstream geneSlitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467G19.T7 (MSMg01no467_g19.b1)MSMg01-467G19.TJ (MSMg01no467_g19.g1)
ACCAG551137AG551138
length740770
length of high quality
(start - end)
336 (319 - 654)401 (68 - 468)
definitionCHROMAT_FILE: MSMg01no467_g19.b1 PHD_FILE: MSMg01no467_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:17 2005CHROMAT_FILE: MSMg01no467_g19.g1 PHD_FILE: MSMg01no467_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGT
AACACTTACGCACACCAGTATATAAGGCTATCAATGTAACAGTTCATTTT
ACATTAAGAACATATATATATATATATATATATATATATATAAACATTGG
CTGTATATCAGAATCTAATATTGCTGACTGCATTACTATCAGAAAAAGAA
TTACACACATTGAAATAAGTATTTGAAAATGAGCTTTTCTAGTACTATAC
TAGCATGACAGTTAAAATGTTTACTTATACTGTAATAATTTAGGAAAGTG
TAGATTGACAGATTTTTATTGTCAAATTAGTTGTTTAAGAGTCACTTGCA
ATGTCTGATGGTAAATTTCAAATTTGGTGCTTTAAAATATTTCCAAATAT
TAAAATTTAAACAATTAGTCATTTAACTTATTTCAAAATTCAGTTTAAGT
TATGTAAAATCAAAACACTAATAATAATTGATAAAATTTTAAATACTTTG
TTTCTTTTGTTATTGTTAGAATTCAGTAAGTTATCTTGATGTGATTTATG
GTTGACAAGACTACAAAAGCATTTTTTGTATATGCAGTGAAATTTCAGTT
TTAAGTGGTCATATTACCATAATTTCATAGCATTAAATTCCTTTTGTCTC
AGTTTTCCAACATTGAAGTATTTTTTATTTAGAATGCTTACTTCTCACAT
AGAATTATTGTTTAACCATTGACCAAACTATCATGCATGT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTTTATGTTTGCATCCCATTCTTAAATTTG
GTTATTTGATTTTTTAATATCCTGTTTCTTGAGGTCTTTATATATTTTGG
ATATACAACCCTCTGTTATATGGGTTTTGTGAAGATCTTTTCTCATTCTG
TAGACTGCTATTTTGTCCTATTGAGAGCATCCTTTGCTTTATAGGAACTT
TTTAGTTTCCCGAGGTTACATTTATCAATTCTTGGTCTTAGTGCCTGGTC
TATTGGTTTTCTGTTCAAGATTTATCACCTGAGTCAATGAATTCAAGGCT
ATTCCTCACTTCTACCAGGTTTAGAGTATCTGGTTTTATGTTTTAAGGGT
TTTGATCAACTTTGACTTGAATTTGGTGCTGGGTGATAGATATAGATCTA
TTTGCATTTTTCTACATGCTGACATCCAGATAGGCCATTTGCAAATGCAA
ATGCTTTCTTTTTTTCTATTTTATAATTTTGGCTTTCCTATCAAAAATTC
CATGTCCCCTCGAGTGTGAATTTATGGTTCTGGTCCTGAATTCAACCCTG
TCCACTCCCCTGTCTGTTTTTATGGCCCCTCTTTTTACGTTCCATCACCT
TTTTTATTTTACTCCGGGCCTTGTCGCACTTTTTTTTTTTTCTCTCTCTC
CTTTTTCCCTGCTTTTCCTCCTCGTTTTTCCTTTCCTTTTACCTCTGCGT
TTTGCTTACATCTTTTTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_g19.b1 MSMg01no467_g19.b1 CHROMAT_FILE:
MSMg01no467_g19.b1 PHD_FILE: MSMg01no467_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:17 2005
         (336 letters)



>mm_chr3_72723553_72724288
          Length = 736

 Score =  642 bits (332), Expect = 0.0
 Identities = 335/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcaaattagttgtttaagagtcacttgcaatgtctgatggtaaatttcaaatttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttgtcaaattagttgtttaagagtcacttgcaatgtctgatggtaaatttcaaatttggt 477

                                                                       
Query: 61  gctttaaaatatttccaaatattaaaatttaaacaattagtcatttaacttatttcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gctttaaaatatttccaaatattaaaatttaaacaattagtcatttaacttatttcaaaa 417

                                                                       
Query: 121 ttcagtttaagttatgtaaaatcaaaacactaataataattgataaaattttaaatactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttcagtttaagttatgtaaaatcaaaacactaataataattgataaaattttaaatactt 357

                                                                       
Query: 181 tgtttcttttgttattgttagaattcagtaagttatcttgatgtgatttatggttgacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgtttcttttgttattgttagaattcagtaagttatcttgatgtgatttatggttgacaa 297

                                                                       
Query: 241 gactacaaaagcattttttgtatatgcagtgaaatttcagttttaagtggtcatattacc 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 296 gactacaaaagcattttttgtatatgcattgaaatttcagttttaagtggtcatattacc 237

                                               
Query: 301 ataatttcatagcattaaattccttttgtctcagtt 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ataatttcatagcattaaattccttttgtctcagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)