BAC Information

Click to search

BAC

Clone NameMSMg01-467J24
Chromosome3 (Build37)
Map Location 3,199,335 - 3,199,681
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467J24.T7 (MSMg01no467_j24.b1)MSMg01-467J24.TJ (MSMg01no467_j24.g1)
ACCAG551289AG551290
length784749
length of high quality
(start - end)
91 (72 - 162)347 (71 - 417)
definitionCHROMAT_FILE: MSMg01no467_j24.b1 PHD_FILE: MSMg01no467_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:33 2005CHROMAT_FILE: MSMg01no467_j24.g1 PHD_FILE: MSMg01no467_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGCGGAATTCA
GTTTCCTTATCCAGACACCCTGTCTGAGAATAATAGCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCT
CTCTCTCTCTCTGGGGGGGGCGCTCAGTCTCTCTGTCTGTCGGCTCTGTG
TACGGCCCTCTGGGTGTCTGGCTGAGAGCACACAGAGACAGAGGTAGAGA
GAGAGAGGGAGACGGAAAGGGGGGAGGAGGACGGGCGGAGATACTCACGC
ACACACAGAGTTTTGTGTGTCTAGAAGGAGGTGGAGTTGGTGAGGGGGAA
GAGATGCGCAAAGCGGAATAGGGGGGGGGTGGTAAGAGGAGAGGGCGTGG
GGCCTGGGGGACCGGACAGTAGGGGGGAGGGGAGGGGAGGAGCGAAGGAG
GGTGGGGGGGGGGGAGAGAGGAGGGGGGTTGTGAATGAGTGGGGGTGGGG
AGGGGGGGTTGGAAAAAAAATGGTTTTTAGGGGGGGGGAGAGGGAGGTAT
GTTTAGGACCAGGTCCTGTTAGGTGCGGGGATTGTGGGGAGCGGGATCGG
GGTAGGGGGGAGGGGGGGGGGGGCAGCGAAAAATGGTGGGGGGGGGTGGG
GGCTTGCGTTGTGGGGGGGGGGAAGGGGGTGTGACCAGCGAGAACGGTGG
GTGGGCGATAAGGAGCCGAAAAAGAATAGAGAGGTGGGTTGTAAGGCGCG
TGCTGTCCTTATGCGTAGGCGGAGTATGGGGGGN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACCGCTGGACTGGAGTCCCTCTTAGAAAG
AGTAACTGGAGCTTCTCTTTAAGGCTTGCTGGTCTAGGGGAATGATTCTT
GCTTAGGGTCTGAGAGGTCCTGTGTTCAAATCTTGGATGAGTCCTCCTCT
TTTGCCAATCAAACCGTTGACCTTGGCTGCTTAGAATTTGAAGTTGACCT
TGGCTGCTTAGAATTTGAAGTTGACCTTGGCTGCTTAAAAGGTAAGACTA
AACAAATGAAAACAGATATCCGTAAGTACTTGTGATGGTTTGTATATCCT
TGAACCAGGGAGTGGCACCTTCTAGATGTGTGGCCTTGTTGGAATAGATG
TGACCTGGTTGGAATGGGTGTGTCACTGTGAGTGTGGGCATAAGATCCTC
ACTCTAGTTGCCTGGAAGTCAGTCTTCGACTGGCATGCTTTGGATGAATA
TGTAAACATCTCCCTTTTGACTGGGCCTTGTCTGCCCGGATTCTGCCCGG
TTCTCACTTTGATGTAATGGTGTGTTTCTCCCCATCTTGTCTGCTTGTCC
TTCTTAATGGTTTTGCTTTTGTCTCAACTTCCCTTTTCCTTATCCTTTCT
CTTATTTTTTAATCCTTTTCTTTTTTCCCGCTTTTTCCCTTCTCCCTTTT
TACTATATTCAATTTCTTTCCCAGCCCCCTAACCTTTTTATTTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_j24.g1 MSMg01no467_j24.g1 CHROMAT_FILE:
MSMg01no467_j24.g1 PHD_FILE: MSMg01no467_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:33 2005
         (347 letters)



>mm_chr3_3199135_3199881
          Length = 747

 Score =  671 bits (347), Expect = 0.0
 Identities = 347/347 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccgctggactggagtccctcttagaaagagtaactggagcttctctttaaggcttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccgctggactggagtccctcttagaaagagtaactggagcttctctttaaggcttgct 260

                                                                       
Query: 61  ggtctaggggaatgattcttgcttagggtctgagaggtcctgtgttcaaatcttggatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctaggggaatgattcttgcttagggtctgagaggtcctgtgttcaaatcttggatga 320

                                                                       
Query: 121 gtcctcctcttttgccaatcaaaccgttgaccttggctgcttagaatttgaagttgacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctcctcttttgccaatcaaaccgttgaccttggctgcttagaatttgaagttgacct 380

                                                                       
Query: 181 tggctgcttagaatttgaagttgaccttggctgcttaaaaggtaagactaaacaaatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctgcttagaatttgaagttgaccttggctgcttaaaaggtaagactaaacaaatgaa 440

                                                                       
Query: 241 aacagatatccgtaagtacttgtgatggtttgtatatccttgaaccagggagtggcacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacagatatccgtaagtacttgtgatggtttgtatatccttgaaccagggagtggcacct 500

                                                          
Query: 301 tctagatgtgtggccttgttggaatagatgtgacctggttggaatgg 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctagatgtgtggccttgttggaatagatgtgacctggttggaatgg 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)