BAC Information

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BAC

Clone NameMSMg01-468M11
Chromosome3 (Build37)
Map Location 42,631,833 - 42,632,033
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666031, LOC100039204
Downstream geneLOC100039219, LOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468M11.T7 (MSMg01no468_m11.b1)MSMg01-468M11.TJ (MSMg01no468_m11.g1)
ACCAG552171AG552172
length827804
length of high quality
(start - end)
195 (127 - 321)251 (72 - 322)
definitionCHROMAT_FILE: MSMg01no468_m11.b1 PHD_FILE: MSMg01no468_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:07 2005CHROMAT_FILE: MSMg01no468_m11.g1 PHD_FILE: MSMg01no468_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXCTAAATCCTGAGTTGCCGCGG
AATTCTGGAAAGTAACAATCACGGAGACACTAAATAGGGTTTCTAGAGGT
TCACAGAGACTGAAGTGTTTATTCTGGAACATATATGGGTTTGTATTAAG
TATTCTGCATATAGTTTAAGGTTCTTACCTTTTAGTTTTGGGGGACACCT
AACACCTAGGAGGGCATCTGGCTCTTTTACCTACTGCCTATTTTGGGGTC
CTCTTTATCCTATTTGGCTTCTTTATTCAGCCTTGATATTAGAGTTTATC
CTTAGCTTATTGCATCTTGTTATTTTTTGCNCAGCTGACATATTTGGGAT
GCCTGTTCTTTAATGAAGGACAATGTAGGAGTGAATCTGGGTGAGAGAAT
ATGTGCTTTTCTTCCCTTTTTTTTCTTATTTTTTTTTCTTTTTTTATTCT
TCTTTTCTTTCCTCTTCTTCTCTTCCTCTTTTTCTTTTCTTTTTTTATTT
ATCCCTCTGTTTTTTCTCCTTTCTCTCTCTCCTCTCCCCTTCTCCCTTTT
TTCTTCTTCTTTTCTTCTTGTCCTCTTTCCTCTCACTTTCTTTTTTATTA
ACTTATTTTTTATCCTTTTACATCTTGTGTTCTTTCCCCTAACCTATACT
ACTCACTCCCTTTTATCCTCTTTCTTTCTTCTCCTCCTTTTCTTTTTTTT
TTTTTCTACTCTTTTTGCCTTTTTTTTCCTCTTCTCCCATCTTCTTCTTT
CATTTTCTCTTCCTCTTCATCTTTTCCCCCTTTTTTCCCCGCTTTCTCCT
ATTTATTTTTTCCGCTCCCTCCCTCTN
GATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTGAAATTCTCACTTAAGGAATACCGAATGGCAGAG
AAGGACCCGAAAAAAAATGTACAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCATGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
GAAAAATTCAAGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTTCAAGCTTGTACAACCACTCTGGAAA
TCATTGTGGTGGTTCCTCAGAATTTTGGTTATAGTATTACTGGAGGATCC
AGCAATACCTCTTCTGGGCATATATCCAGAAGATGTTTCAACAGGTAGGA
AGGAAACATGCTCCACTATGCTCATAGCAGCCTTATTTATAACAGCCAGA
ACCTGGAAAGAACACAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGTATTAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGGAGACATCATCCTGAGT
GAAGTATACCTCTCCCAAGGAACTCCCCCATAATGTTCTCCCTTGAAAAG
GGGATATTACCCTCCTATTTTTTTTTTTCCCCCGAATTTATTAATCAATT
GGTTGAACCTCTTGTCTATCCCTCCAAAATACCAGAACCATCTTGTGGTA
TCATTTTCTTCCTCTTCTCTCAATTGGGGATTCCAATACCCCCTGTCTTG
GAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_m11.b1 MSMg01no468_m11.b1 CHROMAT_FILE:
MSMg01no468_m11.b1 PHD_FILE: MSMg01no468_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:07 2005
         (195 letters)



>mm_chr3_42631639_42632233
          Length = 595

 Score =  331 bits (171), Expect = 2e-95
 Identities = 191/201 (95%), Gaps = 6/201 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacatatatgggtttgtattaagtattctgcatatagtttaaggttcttaccttttagt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaacatatatgggtttgcattaagtattctgcatatagtttaaggttcttaccttttagt 254

                                                                       
Query: 61  tttgggggacacctaacacct------aggagggcatctggctcttttacctactgccta 114
           ||||||||||||||||||  |      |||||||||||||||||||||||||||||||||
Sbjct: 255 tttgggggacacctaacaagtgagattaggagggcatctggctcttttacctactgccta 314

                                                                       
Query: 115 ttttggggtcctctttatcctatttggcttctttattcagccttgatattagagtttatc 174
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 315 ttttggggtcctctttatcctattgggcttctttattcagccttgatattagagtttatc 374

                                
Query: 175 cttagcttattgcatcttgtt 195
           |||||||||||||||||||||
Sbjct: 375 cttagcttattgcatcttgtt 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)