BAC Information

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BAC

Clone NameMSMg01-468O17
Chromosome3 (Build37)
Map Location 60,178,684 - 60,178,890
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823
Downstream geneLOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468O17.T7 (MSMg01no468_o17.b1)MSMg01-468O17.TJ (MSMg01no468_o17.g1)
ACCAG552278AG552279
length789767
length of high quality
(start - end)
248 (80 - 327)207 (327 - 533)
definitionCHROMAT_FILE: MSMg01no468_o17.b1 PHD_FILE: MSMg01no468_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:19 2005CHROMAT_FILE: MSMg01no468_o17.g1 PHD_FILE: MSMg01no468_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GAGATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGACACC
GCGGAATTCATTCTGGTTACATAACAAATATCATAGGCATGGCTTCTTGC
CCAACAAAAAGACAGAGAGAAAATTATCCCAATAATAGAATTAGAGATGG
AAGAATCTCCTAGGAGGCAAAGGCCAGAACTAGATGAATTCAATGTTGTT
TTCTACCAAACTAGGAAAGAAGTACTCAGAGCTGAGGTCTTCAAACTCTT
CCATAAAAGTATAAAGGCTTCCCTTTTAGAGTCACCAAACTCATTCTCCA
AAGCTAGTATTACAACACCAAAACCATTTAGTGATTGACACAACAAAGAA
AGAAAATTATAGACCAATTTCCTTAATGAACATAGAGGCAAAAAAAAATG
TCATTACAAATCAAGAAAACATTTAGATCATGCTCATCAAGGTTTCATTC
CAGAGATTCAAAAATGAGTCAACATATATGAAACAATAACGGTAGTATAA
AACATAGATAGGTCAATGAACAGAAACTACTCTGCCACTTTGGTAGATGT
CGCTAATGGTTTTAAGAAAGTTCACTCCCTCCCTATGAATAAGAACCCCC
CTAGAAACTTCGTTTTAGCAGTGCCTTTTTTTTCTTTTTAAAGGGTTTCG
CGTTGTGTATCCTCTCCTCTTTTTTTTTTTTTTGGTGATTAACCATACTT
TTTTACTGTTACTCTCCAATTAAATAAGTCTCGCTACATCAGTTCCCTTG
TTATCCCCCTTTCTTTTCTTCTTTCCATCCCCTTCCCCN
NCCAATGCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGTGCTCATGGAGGCCAGAAGAGG
GCATTGGATCCCCTACATCTAGAATGGTTGTGAGTCTCCTGATGTGGGTG
CTGGGAACTAGACTCTGGTCCTCTGGAAGAGCAGTCAGTGACTTTAACCT
GTGAGCCATCTCTCCAGTCCCCCTTTACTAAAGCCCACTAATTTCTCTGC
TTCCTAAGAATGGGGAGTCTGCCCTACCTATACCACGTTCACTAGAGCGA
AGGGAGCCTATGCTCGCTTGGTCCTGTGTGCAGACTCCTCTGTAGGCTTT
TAGCATCTTCTAAATGTCAGGCCACATTGTGGTACTGCCATGCTGGCTTA
GTCCTGGGCACATTTCCATCCATGTAATCCTTTGTGTCATCTCATCTGCT
CTTGCCATTTTGGATTCCAAAAAACACACATCTTCCTTCTCTGATAGTAT
CATTGCAGTCTCTCACAGGCTAAAATAATCCATTTAGAATTACTGTCCTA
TGTTAGAGAATTTAACAGGAGTGACTTGGTCATACCGCGACTATAGTTGT
GAAATGGTGAAATCCTGGCTTAATGAAGTGGCTTTGTCCTCTCGGTCCTT
TCCTTTTTTTTTTCCTTTTGGAGTAACTTCTGGGTATTATGTGCTATGAT
CTAACACTTGGGCTATGTTAGAGTTTACTTTTCTTCTCTACTAGTTCTTC
ATTTTTATCCTTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_o17.g1 MSMg01no468_o17.g1 CHROMAT_FILE:
MSMg01no468_o17.g1 PHD_FILE: MSMg01no468_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:19 2005
         (207 letters)



>mm_chr3_60178484_60179090
          Length = 607

 Score =  369 bits (191), Expect = e-107
 Identities = 203/207 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcagactcctctgtaggcttttagcatcttctaaatgtcaggccacattgtggtact 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgcagacttctctgtaggcttttagcatcttctaaatgtcaggccacattgtggtact 260

                                                                       
Query: 61  gccatgctggcttagtcctgggcacatttccatccatgtaatcctttgtgtcatctcatc 120
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gtcatgctggcttagtcctgggcacatttccatccatttaatcctttgtgtcatctcatc 320

                                                                       
Query: 121 tgctcttgccattttggattccaaaaaacacacatcttccttctctgatagtatcattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgctcttgccattttggattccaaaaaacacacatcttccttctctgatggtatcattgc 380

                                      
Query: 181 agtctctcacaggctaaaataatccat 207
           |||||||||||||||||||||||||||
Sbjct: 381 agtctctcacaggctaaaataatccat 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)