BAC Information

Click to search

BAC

Clone NameMSMg01-469E01
Chromosome3 (Build37)
Map Location 65,885,046 - 65,885,525
singlet/doubletsinglet
Overlap geneVeph1
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048
Downstream geneTpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469E01.T7 (MSMg01no469_e01.b1)MSMg01-469E01.TJ (MSMg01no469_e01.g1)
ACCAG552532AG552533
length754765
length of high quality
(start - end)
546 (51 - 596)460 (79 - 538)
definitionCHROMAT_FILE: MSMg01no469_e01.b1 PHD_FILE: MSMg01no469_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:46 2005CHROMAT_FILE: MSMg01no469_e01.g1 PHD_FILE: MSMg01no469_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGATCTTTCCAAGACTTTTATCATGAATGGATGTTGGAT
CTTGTCAAATTCTTTTTCCGCATCTAACAAGATGATCATGTGGTTTTTGT
CTTTGAGTTTGTTTATATACTGGATTACATTGATGGATTTCCGTATATTA
AACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGAT
TGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTT
TTGCATCGATATTCAAAAGGGAAATTGGTCTGAAGTTTTCTATCTTTGTT
GGATCTTTCTGTGGCTTAGGTATCAGAGTAATAGTGGCTTCATAGAATGA
GTTGGGTAGAGTTCCCTCTACTTCTATTTTGTGGAATAGTTTGTGCAGAA
CTGGGATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCA
TCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAAGGACTGTTTCTAT
TTCTTTAGGGGATATGGGACTGTTTAGATCGTTAACTTGATCCCGATTTA
ACTTTAGTACCTGGTATCTGTCTAGAAAATTGTCCATTTTGTCCAGGTTT
TCCAGTTTTGTTGAGTATAGTCTTTTGCACAAAGATCTGAAGGTGCCTTT
GCATTTCTTCCGCATCTGGTGCTAGGCCTCTCCTTCCCTTTCTATATCCT
GTAG
GGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCATTTTCTTTTAGAATCCA
GGGAGACTCCTACTGACAACCACATTCAAATTCTAAATATCAAATGACTC
AGAGAGTGACTCTGTTAGGGATTATTCAGATTTATGGAGGATGTGAGTGC
CAAAATTCTGAGCTTTTCCTTCTTTCTCCTCTCCCCCCCCTTTTTTTTTT
GCAAGAATTAAGTCACCTCACATGCTTTAGGCGGCAAGAGTGAGTGAGAG
TCATGACCTACTTCTCCTTCTTAATAAAAAAAAAAAAAAAGTGGCAGGCT
GTAAGTCCTGACAGCCCCAGGGAAGCCTTCTGCCTTCTTTTACTGTTACA
GGTCCTGCGGTTCCAAGACTCACTGGCAGCTGTAAAGAGGCTTTGCATCG
TTTTCCAGAAGTCAGTTACGTTCGGCTACATCTTCTTGCTCAACCTCTGT
TCTCTCATTAACTAGAGTAATGGGTTCTGTGGGGTCAGCAGACAGGTCTC
AGAGGGTTTCTGAGTTATTTCTGGGATTTGGAAATCATCTGCTTTGTACC
TTTGTAAGATGACTATTAGAACTGAGTTAGCTATTGGACTGCAAAATAGC
TTCTGGTGGAATCATTGGGCCTTATGGTTATAATTACCCCTTGACTACCA
CAACTTAAGTTCTCGCTTCTTGCAAATACAGCCTTAAAAAACAGATCTTC
TGCTTATCCATTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_e01.g1 MSMg01no469_e01.g1 CHROMAT_FILE:
MSMg01no469_e01.g1 PHD_FILE: MSMg01no469_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:47 2005
         (460 letters)



>mm_chr3_65884866_65885725
          Length = 860

 Score =  785 bits (406), Expect = 0.0
 Identities = 453/480 (94%), Gaps = 20/480 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccattttcttttagaatccagggagactcctactgacaaccacattcaaattctaaat 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 tcccattttcttttagaatccagggagacttctactgacaaccacattcaaattctaaat 240

                                                                       
Query: 61  atcaaatgactcagagagtgactctgttagggattattcagatttatggaggatgtgagt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 atcaaatgactcagagagtgactctgttggggattattcagatttatggaggatgtgagt 300

                                                                       
Query: 121 gccaaaattctgagcttttccttctttctcctctcccccc-----------ccttttttt 169
           ||||||||||||||||||||||||||||||||||||||||           |||||||||
Sbjct: 301 gccaaaattctgagcttttccttctttctcctctccccccgccccccccccccttttttt 360

                                                                       
Query: 170 ttt-gcaagaattaagtcacctcacatgctttaggcggcaagagtgagtgagagtcatga 228
           ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 361 ttttgcaagaactaagtcacctcacatgctttaggcggcaagagtgagtgagagccatga 420

                                                                       
Query: 229 cctacttctccttcttaataaaaaaaaaaaaaaa--------gtggcaggctgtaagtcc 280
           |||||||||||||||||| |||||||||||||||        ||||||||||||||||||
Sbjct: 421 cctacttctccttcttaaaaaaaaaaaaaaaaaaaaaaaaaagtggcaggctgtaagtcc 480

                                                                       
Query: 281 tgacagccccagggaagccttctgccttcttttactgttacaggtcctgcggttccaaga 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgacagccccagggaagccttctgccttcttttactgttacaggtcctgcggttccaaga 540

                                                                       
Query: 341 ctcactggcagctgtaaagaggctttgcatcgttttccagaagtcagttacgttcggcta 400
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 541 ctcactggcagctgtaaagaggctttgcatcgttttccagaagtcagttacgtttggcta 600

                                                                       
Query: 401 catcttcttgctcaacctctgttctctcattaactagagtaatgggttctgtggggtcag 460
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 601 catcttcttgctcaacctctgttctctcattaactggagtaatgggttctgtggggtcag 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)