Query= MSMg01no469_n23.b1 MSMg01no469_n23.b1 CHROMAT_FILE:
MSMg01no469_n23.b1 PHD_FILE: MSMg01no469_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:36 2005
(338 letters)
>mm_chr3_122110807_122111544
Length = 738
Score = 615 bits (318), Expect = e-180
Identities = 327/330 (99%)
Strand = Plus / Minus
Query: 8 actttctttctgactgaccccatttattccaggctcccagtgcagagtgcactataatgt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 738 actttctttctgactgaccccatttattccaggctcccagtgcagagtgcactatcatgt 679
Query: 68 tggctccatgatcatggctcagtccattgcttcagcacagattacaggcatcccatatgc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tggctccatgatcatggctcagtccattgcttcagcacagattacaggcatcccatatgc 619
Query: 128 tttgcctcctcaacccttgagacagcttgagctgggtgttattatctctgtcttatggat 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 618 tttgcctcctcaacccttgagacagcttgagctgggtgttattatctctgtcttatgggt 559
Query: 188 gagagaatggaagctctgagaacgtgtatgcctgaacagtgttggttagaatgcagacca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagagaatggaagctctgagaacgtgtatgcctgaacagtgttggttagaatgcagacca 499
Query: 248 gacacatatgctccaattcaggtctatcccccagtgctaagttgtttcaactctgggatt 307
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gacacagatgctccaattcaggtctatcccccagtgctaagttgtttcaactctgggatt 439
Query: 308 gagggaagggatgtatgtggagagtagagg 337
||||||||||||||||||||||||||||||
Sbjct: 438 gagggaagggatgtatgtggagagtagagg 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_n23.g1 MSMg01no469_n23.g1 CHROMAT_FILE:
MSMg01no469_n23.g1 PHD_FILE: MSMg01no469_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:36 2005
(410 letters)
>mm_chr3_121920951_121921762
Length = 812
Score = 716 bits (370), Expect = 0.0
Identities = 401/412 (97%), Gaps = 2/412 (0%)
Strand = Plus / Plus
Query: 1 tatagacaatcctcacacagaaataaaacatgaacatgataactacacccccttgtaaag 60
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagacgatccccacacagaaataaaacatgaacatgataactacacccccttgtaaag 260
Query: 61 tggcttcaacctttctttccatattttattttactgtggggaggagtagaggatagatgt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tggcttcaacctttctttccatattttatcttactgtggggaggagtagaggatagatgt 320
Query: 121 tcgccaagtgtgcataaggaagtcagaaggacagccttgtgcaatcgggtctctcctacc 180
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 321 gcgccaagtgtgcataaggaagtcagaaggacagccttgtgcagtcgggcctctcctacc 380
Query: 181 atctctatggggtactggggattaaagccaggatgttcatcgttgcagcaagtgttttca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 atctctatggggtactggggattaaagccaggatgttcatcgttgcagcaagagttttca 440
Query: 241 cctgcag--tcttttctccagctctgtaacttgtgttcctaaacttagatcctaacttta 298
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 cctgcagagtcttttctccagctctgtaactcgtgttcctaaacttagatcctaacttta 500
Query: 299 tgggatggcatctttagctccatcttgtatgaagaaataatgtgaacgctatctactacc 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tgggatggcatctttagctccatcttgtatgaagaaataatgtgaaccctatctactacc 560
Query: 359 ttaacactcccagcaataaagcaaaattcagagggcaagggtagatctttgt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaacactcccagcaataaagcaaaattcagagggcaagggtagatctttgt 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 812
Length adjustment: 9
Effective length of query: 401
Effective length of database: 803
Effective search space: 322003
Effective search space used: 322003
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
