BAC Information

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BAC

Clone NameMSMg01-470B08
Chromosome3 (Build37)
Map Location 62,534,476 - 62,534,710
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
Downstream geneLOC676984, LOC666967, Mme, Plch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470B08.T7 (MSMg01no470_b08.b1)MSMg01-470B08.TJ (MSMg01no470_b08.g1)
ACCAG553168AG553169
length774885
length of high quality
(start - end)
246 (83 - 328)134 (77 - 210)
definitionCHROMAT_FILE: MSMg01no470_b08.b1 PHD_FILE: MSMg01no470_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:52 2005CHROMAT_FILE: MSMg01no470_b08.g1 PHD_FILE: MSMg01no470_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXCACTAGTGCCACACACCG
CGGAATCTGGTCTCTTTCCCTTGCCTTAAGCAAACTTCTAATACCATCTG
AAGTGTAATTAGGCAGTCCTTTTTGTTATGACATTAGAAGTGGACGTACT
TGGTGAAATATGGTTGTTTTGATGGGAAATACATTTAGGTGAATAACCAT
GGTGCTTGTCTCTAGTTAAAGTGAGAACATGTATGCTTATCATATTATTT
TAAGGCAGAATATCACTATTGTAAATGATTTTTTTAAATGTTGATAAAAT
GAAGCAAGAGCCATGTCTGTTATATGTGTATTGCTTACCTACGTGAATGC
AAGCTCCACCTGGTCCTTGATTCTCATTATAATTTACAAAGCACCGACTA
TATGCCCAGCACCATCTCCATGACTAATACATGAACATACATGAACAAAG
AAGATCGAATGGAGACCTGACGAACAGAGAATTAGATGACAGCACACCTG
TGCTCAAAGATGTACACGCTATACACCACCCATTTCACGAGATACCAGAC
ATTTCTGACAAGACTTCCCGACATGCACCAGCATAATCATTCTTCAAAAC
AATAGATAGTTGATCCACGCCTCCCATGTGGCAGCTCACCTACCTGCTAC
CCCCCCAACACCAAACTCTCCCCATTCTTGCATACCCCCCCCAACTTTCG
CCCATTTCCCCCGCCCCCTCCTATCGCCCCTCCCACCCCCACAGGGCGCC
CTCACCACCTTTTTCCCCCCCCTN
NACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTGCAAAAGCAGCCAGTGCTCT
TAACCACTGAGCTGTCTCCTTAGCCCATGTGTTAAAGATTTTTAACATAT
TTCTCTTCTTTTGTTTGTTTTTTGTTTTGTTTTTTATTGTTGTTTTTGTT
TGTTTTTTTCTCTCTACACTATTTTTCTCCGTTTATTCCCTTCTCTTCCC
TCTTCCCCTTTTGTACCTTCTCCTCCCTTCTTTCTCACAATTTTTCCTGT
TTCTGTTTCTCATGCTGTCCGTTCTTTTTTTTTTCTCTGACCCCCTTCCT
CCCCTCATTCCTTTTCTTTTCTTTTTTCGTCCCATATTCATTCCCGCCCC
TCCCACTTTTTTTTCTTTTTTCCCTTTTTCCCCCCCCCCTCTTTTTTTTC
CTCCTCCTTTTTATTTCTTCTCTCTCCCCCCCTCTTTCCTTCTTTTTTCC
CTCCCTTCCTTCCCCCTTTTTTCCCTTCCCCCTCCTCCATTTTTTTATCC
CTCCCCCTTTTTTCTTCTTCTTCTCCTCTTCCTCTCATCCCCGCATACTT
CCCTCTTTTTTTGCCTGCTCTTTCTTCACTCTTCCTTTCTTCTTTCCTTC
CTCCCCTTCCTCCTTCCCTTTCCCTCTTCTTCCCCCCTCCTTTTCCTATT
CTTCTTTCCCCCCCCCCTATTCTCTCCCCCTTCTCCCCATTTCCTTTTTA
TCCTCCCCCCCCCTTTTTTTTCCCCTTTCCCCTTTTTTTTCTCTATCTCC
CCTTTTCACCTTCTTCCTCTTTTTTTCTCTTTTGATCTCTTCAACTCTCC
ACTTCCCTCTTCCCCCTCTTCTTACCCTATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_b08.b1 MSMg01no470_b08.b1 CHROMAT_FILE:
MSMg01no470_b08.b1 PHD_FILE: MSMg01no470_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:52 2005
         (246 letters)



>mm_chr3_62534276_62534920
          Length = 645

 Score =  358 bits (185), Expect = e-103
 Identities = 224/237 (94%), Gaps = 3/237 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttctaataccatctgaagtgtaattaggcagtcctttttgttatgacattagaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 435 aacttctaataccatctgaagtgtaattaggcagtcctttttgatatgacattagaagtg 376

                                                                       
Query: 61  gacgtacttggtgaaatatggttgttttgatgggaaatacatttaggtgaataaccatgg 120
           || ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| 
Sbjct: 375 gatgtacttggtgaaatatgcttgttttgatgggaaatgcttttaggtgaataaccatg- 317

                                                                       
Query: 121 tgcttgtctctagttaaagtgagaacatgtatgcttatcatattattttaaggcaga-at 179
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | 
Sbjct: 316 tgcttgtctctagttaaactgggaacatgtatgcttatcatattattttaaggcagaca- 258

                                                                    
Query: 180 atcactattgtaaatgatttttttaaatgttgataaaatgaagcaagagccatgtct 236
           ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct: 257 atcactattgtaaatgattttttaaaatgttgataaaatgaagtaagagctatgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space:   150732
Effective search space used:   150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)