BAC Information

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BAC

Clone NameMSMg01-470E23
Chromosome3 (Build37)
Map Location 44,322,139 - 44,322,535
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470E23.T7 (MSMg01no470_e23.b1)MSMg01-470E23.TJ (MSMg01no470_e23.g1)
ACCAG553342AG553343
length778766
length of high quality
(start - end)
407 (51 - 457)505 (73 - 577)
definitionCHROMAT_FILE: MSMg01no470_e23.b1 PHD_FILE: MSMg01no470_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:10 2005CHROMAT_FILE: MSMg01no470_e23.g1 PHD_FILE: MSMg01no470_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTTGAGTATTATTGCTATTTTAAACAATAGTCACATGCTCGATTCAT
AAAGATACCAATAAATTATTTTGAATATTGCTGAGACCTCTTTACATCCA
ATGAATACAACATTCAAGGTGACTGTTTTCTCTACATGCCTGTCATGATT
GTCAAGATTGTCTATGCTTATTATTAATACTTATTTTTGCATAGAGATGA
AATAGAGTCTTGTTACATGTTTATGCATATTTTCTCTTACATAAGGATGT
TGGGTAGTAGTACATGCTCTTTTGGCCACATTTATTCCATAGTTTTTGAA
ATATCTGTTTGGGTTTTGGCTCAACCATAGTGAGTACTGAAATTAACTCT
CTAATAACAATGGGTAAACTATGAAGGCATATATACAAGTAGAACTGTAC
AGAATGAGCAGGTTTCGCTTATATATTTACGAGTGTGTGTGCTTGTGTGT
GCTTGTGTGTGTGTGTGCGCGTGTGTCTCTCCCCCCCCCCNCCCCCCTCC
CCCCCCTCCCCTTCTCTCCCTCCCCCCTCCTCCTCTCCCCCCCCCCCCCC
CTTCCCCTTCCTCTTTCTCCCCCCCCCCTCCCCCCTTCCTCCCCNNTTTC
CTCTTCCTTCCCCTCTCCCCCCCCTCCTCTCCCCTCTCCCCCCCTCCCCT
TCCCCCCCCTCTCCCCTCTCCCCCCCCCCCCCTTTCCCTTCCCTTCCCCC
CCCTCCCCCTTCCCCCTCTCCCTTCCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAAAATCTCCCAAAAAAGAACACCAA
AAAACCAGACGGTTTTTGTGTAGAATATAGAAGACTTTCAAAGAAACATT
AGTGACAGTGTTACTCATATTATTTACAAAATAGAAACAAAAGGAACATT
GACAAATTATCTTTATGAGGCTCCAGTCACCTTGATATCCAAACCACACA
GAGACTCAACAAAGAAAGAGAATTACAGACTAATTTCCTTCATAAGCATT
GATACAAAAATTATCAATAAAATGTTTGAAAACTGAATCTAAAATCCAAA
ACCTAATCAAAAAGATCATCCACTGTGATCATGTTGGTCACATCGCAGAG
GTGTACTAATGTTTCAATATACACAACAATCTTAAACAATCAAAAGAATA
CCAATGAAAGAGGAAGAATTGTAAGTAACATTATTTACAGATGATAAGAC
AGTATATATAAATGACGCCAAAATTCTACTATGGAACTCCTACACCTGGT
AAACACTTCAGCAAAATGTCTGAATANCAGATTAACTCCCAAGAAAAAAA
AATCAGTAGCCCTCCTGTAAAAAGGGGGCACAACAAAGAAATCAGGGGAA
TACATGCCTCACAATGGCCACAAATGACATAAAGCCCCTTGGTGTAGTTT
TACCCATGCAAGTGAAATACCTATATGATAGGAACCTCCCGGCCTTGGAG
AAACAACTCGAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_e23.b1 MSMg01no470_e23.b1 CHROMAT_FILE:
MSMg01no470_e23.b1 PHD_FILE: MSMg01no470_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:10 2005
         (407 letters)



>mm_chr3_44321939_44322745
          Length = 807

 Score =  683 bits (353), Expect = 0.0
 Identities = 389/407 (95%), Gaps = 10/407 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcttgagtattattgctattttaaacaatagtcacatgctcgattcataaagatacca 60
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttgagtaaaattgctattttaaacaatagtcacatgctcgattcataaagatacca 260

                                                                       
Query: 61  ataaattattttgaatattgctgagacctctttacatccaatgaatacaacattcaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaattattttgaatattgctgagacctctttacatccaatgaatacaacattcaaggt 320

                                                                       
Query: 121 gactgttttctctacatgcctgtcatgattgtcaagattgtctatgcttattattaatac 180
           |||||||||||||||||| ||||||||||||          ||||| |||||||||||||
Sbjct: 321 gactgttttctctacatgtctgtcatgattg----------ctatggttattattaatac 370

                                                                       
Query: 181 ttatttttgcatagagatgaaatagagtcttgttacatgtttatgcatattttctcttac 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttattcttgcatagagatgaaatagagtcttgttacatgtttatgcatattttctcttac 430

                                                                       
Query: 241 ataaggatgttgggtagtagtacatgctcttttggccacatttattccatagtttttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 431 ataaggatgttgggtagtagtacatgctcttttggccacatttattccatagtttttaaa 490

                                                                       
Query: 301 atatctgtttgggttttggctcaaccatagtgagtactgaaattaactctctaataacaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 491 atatctgtttgggttttggctcaaccatagtgagtactgaaattaactctctaataccag 550

                                                          
Query: 361 tgggtaaactatgaaggcatatatacaagtagaactgtacagaatga 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgggtaaactatgaaggcatatatacaagtagaactgtacagaatga 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)