BAC Information

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BAC

Clone NameMSMg01-470K03
Chromosome3 (Build37)
Map Location 38,002,575 - 38,003,019
singlet/doubletsinglet
Overlap geneEG665821
Upstream geneTenr, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811
Downstream geneLOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470K03.T7 (MSMg01no470_k03.b1)MSMg01-470K03.TJ (MSMg01no470_k03.g1)
ACCAG553590AG553591
length747769
length of high quality
(start - end)
429 (72 - 500)473 (79 - 551)
definitionCHROMAT_FILE: MSMg01no470_k03.b1 PHD_FILE: MSMg01no470_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:36 2005CHROMAT_FILE: MSMg01no470_k03.g1 PHD_FILE: MSMg01no470_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATCAAGTTACCCATACATTGATGCCTGTGGAGGTCAGCCTGTAC
CCTTTCGAAAGGTGTGATATACAGCAGATTCATAAAACATATAGAAAACA
TTAGCTATCAGAACCCTGTGGATCCCCCCCCGAGTGACATCATTGTACAA
AACACAATATACTCCATTTTCTCCTAATCTCTCTCGAGTCCTGGTTATTT
CCTTTTTGTACATTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCT
CAGGCTCTTTTCCGTTAGTCTTTTTTTGTGTGCTTCCCTGGGTGGCGCAG
GCTGGCGCTTTAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTC
TTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGA
GTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGC
CCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTG
TAGACTCTTCTGGTTTTCTGCGCCAACACTTACGGCGCATTCTTTTCTGA
ACCCCCCCACTTCCCTGATGTCTACACCATCCCCCTTTCTTGCACACCCC
CCTGTTTGTGTTTGAAGCAACCACTCCCTGCTTCCCTCCAGACCTACCCA
ACTTTTCCGCCCGGTCCCCTCCTTCCCTCCCCCCGTCTCCTTTTGCG
NCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTATGGATGGACATCAAA
TCCAAATAAAAAGCCATAGGTTAGTCCCATAACAGACATGCTTTGATTGC
ACTGATAGGTTTGCTTTGCTGGCCCGTCAGTATCACTATGCACAGGGTCC
ACCTTAGGAAAACTGCTGGTGACAGATTCTCCCCCAGACACCTACTTGCA
CTATAACTGCTTTCCAGCAGGAAGGAATGTTCCAGACCATTTTCATTTTA
ATTTCAAATCTAACTTAATATTCAAGGTAATTTAATTGCATATGTTTCTT
CTTTGAAAATTCCTGAGTTGGAAGGAAATGAGAATGGAAGACTCAAGGGA
AAGAAAAATAATCCAGTCATTTTATTCTCCCATAGAAGCAATAGAGTTAT
ATCTTAATAAATATATTGATAGACTCCATATGTTAAGAATCTAGGAGTTG
GGATTACTCAAGATTAACTGTGAATCCCAGGTGTGACCCCTACTGTCTAC
ATAAGCCAGAAGAAGTTAAATTCTGCACCTTATTTTGGTTTCTTTATCTA
TAACCACCAATGGTGAAAATACCGGACAGCCTTAGAAGACAAAGCACAGA
GTGATGCCTGGGTTCCAGCTAACTTTGATATGAACTGTCAGCCACCCCTG
ACCCTGCATGCAATATCCTTTCCCCTTCTTTTTTTACCCCTCCCTGCTCT
TCTTATCCACCCTGACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_k03.g1 MSMg01no470_k03.g1 CHROMAT_FILE:
MSMg01no470_k03.g1 PHD_FILE: MSMg01no470_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:37 2005
         (473 letters)



>mm_chr3_38002148_38003019
          Length = 872

 Score =  839 bits (434), Expect = 0.0
 Identities = 443/448 (98%), Gaps = 5/448 (1%)
 Strand = Plus / Minus

                                                                       
Query: 28  ataaaaagccataggttagtcccataacagacatgctttgattgcactgataggtttgct 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ataaaaagccataggttagtcccataacagacatgctttgattgcactgataggtttgct 813

                                                                       
Query: 88  ttgctggcccgtcagtatcactatgcacagggtccaccttaggaaaactgctggtgacag 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ttgctggcccgtcagtatcactatgcacagggtccaccttaggaaaactgctggtgacag 753

                                                                       
Query: 148 attctcccccagacacctacttgcactataactgctttccagcaggaaggaatgttccag 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 attctcccccagacacctacttgcactataactgctttccagcaggaaggaatgttccag 693

                                                                       
Query: 208 accattttcattttaatttcaaatctaacttaatattcaaggta--atttaattgcatat 265
           ||||||||||||||||||||||||||||||||||||||||||||  |   ||||||||||
Sbjct: 692 accattttcattttaatttcaaatctaacttaatattcaaggtaaca---aattgcatat 636

                                                                       
Query: 266 gtttcttctttgaaaattcctgagttggaaggaaatgagaatggaagactcaagggaaag 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gtttcttctttgaaaattcctgagttggaaggaaatgagaatggaagactcaagggaaag 576

                                                                       
Query: 326 aaaaataatccagtcattttattctcccatagaagcaatagagttatatcttaataaata 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaaaataatccagtcattttattctcccatagaagcaatagagttatatcttaataaata 516

                                                                       
Query: 386 tattgatagactccatatgttaagaatctaggagttgggattactcaagattaactgtga 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tattgatagactccatatgttaagaatctaggagttgggattactcaagattaactgtga 456

                                       
Query: 446 atcccaggtgtgacccctactgtctaca 473
           ||||||||||||||||||||||||||||
Sbjct: 455 atcccaggtgtgacccctactgtctaca 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space:   399106
Effective search space used:   399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)