XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACACAATCCGCGGAATTCA
AAATAAAAATCTCTAAATATCTACGATAAGAAATTACCTGTCAGATATAA
TGATACCATTATCATCATCATTATTATATACATCAAATACTTTAATGATG
ACAGGAAAGACAGCAGGGGGCGTTTCTTACCATTTCACTGTATTGTGAAG
GTCTGGAAATATCTGGGATCAAGACTGGGGAAAATTGGAGAGGAAAGAGG
TTAGAGAGTCTTAAATGCTAGCAAAGGCCAGGGAATAAAGGCTGGAGTCA
TTTAAACCTGGAAGCACTTTTTTTTTAGGAAATCTTCCATAATTCCCCCC
GCTCTGCTGTAAGGCACAGGGTAACAGCCAAACCTAAGAGCCTACTCAGT
ACCTTCCCTAAACTGCTAAATTTAGGGAATAGCCCCAAGGTGAGGAGGGA
AATAAGACTGACTTCCCTAAATTATGGCTGTATGTCCTATCTAGTATAGT
TTCCAAGCTGTTATACCCTAAAATTCCTTCTCTCTAAGATCTAACGTCCT
TACCTTGTAAGGCTATAAAATATAACGAATTTCCCTCTGCCCTGTGGATT
GATGTTAGACTCCCATCCTGCAGCGACCTACGTTATTAAAGACCTGGTTA
TCCAAAATACATGCCAGGCAACTCTCACCTAAATCTGGAAAGAATTTTTT
CCTTATTTAATAGCCTCCATTATCCCACAGCCCTACTGCACCCCCACCTT
ACCCCTGCCN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGTCTTTGAAGGGACTGGTGATGGTGTGC
CATATTGTGTTTTGAGGCTGGGCAGCAGCAGCAGCAAGCCAGAGCTTGCC
AGTCAATTGATCACACAGAGACATGAGTGGCCCTCTGCATTGTGCTGACC
CACTAAGCTAGAGTGGTTCATGTCTTTCTTATGCTACTCTGACCTTAGGA
TGGATTTATTTAAATTCACCCAACTATGACCCCCTTACCATGCAAAGAGA
AGGCATACTTTGTCATATTTAGATACTGGAAGCTTGTTTTTGCACAAAAA
AATGGTGACTGGTGAAGAGAAGTAAATGGCCAAATTGTACTACCAAAGAG
ATATCCCAGGGTAGAAGCCAAGATGAGCAGAAAAAATGACAGTGGAAGAC
CACGGGAGTGAGGAGAAAAAAGCAGGTGAAGGGGAGGAGGCTGAGGAGTG
GGATTTGTGCACTACCCCCCTTCTTTTTCTTTCCCTTTCCCTCCCTTTCT
TCCTCCCCCCCTTCTTTCTCCTCTTTCTTCCCCCTCTTTCTTCCTCCCCC
CCTTCCCTCCCCCCCTTTCTCCCTCTCTTCTCCTTCCCTCTTTTCCTCTT
CTCTCCCCCCTCCCTCCTTTTTTCTTCCCCCCTTCCCCCTCCCNNTTTTT
TTCTTTCCCTCTTTCTCCCCCTCCTTTTCCCCTCTCCCCTTTCCTCTCCC
CCTTCTTTTCTCCTTCCTCCCTTCTTCTCCCTTTCCCCCTTCTCCACG

Query= MSMg01no470_m21.b1 MSMg01no470_m21.b1 CHROMAT_FILE:
MSMg01no470_m21.b1 PHD_FILE: MSMg01no470_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:50 2005
         (138 letters)



>mm_chr3_110033441_110033978
          Length = 538

 Score =  265 bits (137), Expect = 8e-76
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttaccatttcactgtattgtgaaggtctggaaatatctgggatcaagactggggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttaccatttcactgtattgtgaaggtctggaaatatctgggatcaagactggggaaa 260

                                                                       
Query: 61  attggagaggaaagaggttagagagtcttaaatgctagcaaaggccagggaataaaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggagaggaaagaggttagagagtcttaaatgctagcaaaggccagggaataaaggct 320

                            
Query: 121 ggagtcatttaaacctg 137
           |||||||||||||||||
Sbjct: 321 ggagtcatttaaacctg 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no470_m21.g1 MSMg01no470_m21.g1 CHROMAT_FILE:
MSMg01no470_m21.g1 PHD_FILE: MSMg01no470_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:50 2005
         (417 letters)



>mm_chr3_110231394_110232210
          Length = 817

 Score =  714 bits (369), Expect = 0.0
 Identities = 405/417 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtctttgaagggactggtgatggtgtgccatattgtgttttgaggctgggcagcagca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 617 aggtctttgaagggactggtgatggtgtaccatattgtgttttgaggctgggcagcagca 558

                                                                       
Query: 61  gcagcaagccagagcttgccagtcaattgatcacacagagacatgagtggccctctgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 557 gcagcaagccagagcttgccagtcaattgatcacacagagacatgagtggcactctgcat 498

                                                                       
Query: 121 tgtgctgacccactaagctagagtggttcatgtctttcttatgctactctgaccttagga 180
           |||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 497 tgtgttgagccactaagctagagtggtacatgtctttcttatgctactctcaccttagga 438

                                                                       
Query: 181 tggatttatttaaattcacccaactatgacccccttaccatgcaaagagaaggcatactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tggatttatttaaattcacccaactatgacccccttaccatgcaaagagaaggcatactt 378

                                                                       
Query: 241 tgtcatatttagatactggaagcttgtttttgcacaaaaaaatggtgactggtgaagaga 300
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 377 tgtcatatttagatactggaagcttgtttttgcacaaagaattggtgactggtgaagaga 318

                                                                       
Query: 301 agtaaatggccaaattgtactaccaaagagatatcccagggtagaagccaagatgagcag 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 317 agtaaatggccaaattgtactaccaaagagatagcccagggtagaagccaagatgagcag 258

                                                                    
Query: 361 aaaaaatgacagtggaagaccacgggagtgaggagaaaaaagcaggtgaaggggagg 417
           |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 257 aaaaaatgactgtggaagaccaggggagtgaggagagaaaagcaggtgaaggggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)