NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTACAAGATCAATCTGAGTTGTTTGTTTGTTTATTTATTTAT
TTATTTATTTATTTATTTATTGCATTAATCTTCTCTGATACTGAACAGGA
TTATGTGGTCATTAAAAGACCATGCAGCCCATGAGGAAATGAATGCCCAC
TCTGTGACCAGCACAAGGTGCCAGCTCAGAATTCTTCATAATCATACTCT
TCTGAGTCTATTTTACTGTGAAGCAAGCATAACAAAGTCCATCATGGAAG
AGAAAAGATTTTTAAAGAGACTAGCATGTAATAGGATTCAATAAGCCTAA
AGCAATATCCCTTGAATATTTACATATTATAAAAAAATATTTGCCTGGCT
TTATGCACTTTTCAGCATTTGTTTGTATTTATTTTATCTTCCATTTAGGT
TCCAATATTCCCAGAGAGAAAGGAGAGTCTTATTTCTCTTTTACATGGTA
TGGTATATTACCCAGCACATTGGAAGAGAGTAAATATTTGTTGAAAGAGT
AGCTTCAAGTGTGCTCACTAACATATGCTAGTTTTCATTTGTGGACAATT
AGTACTTTGAGGGAAATGAACAGTCCTTTCTCATATTCAAGCAAAGGTAA
GCTTTTGTCAACTACTTTGTGAAGAAAAGTTCTTCCTCTCTCNAATTTAC
AAAAGACTTTTGTGGNTAGTACTGTANGAAATAACTAANGAAATGAGAGA
AACAAATTCTCTTTTGTCTTTAAGAATG

GCGGGGATAGGGAGTGGTGGGGGGGCTTTATCTTTTTCGGATGCGGATCA
CAATTTTGCCCAAAAGAAGAAGGAGGGACGGTGTTCCCCCATTAGAATAT
GAGCGCTCTTGCCTCCTCCCGGTCTGGTGTATAAGGGTGTAAGCATACAT
GAAGTTATCCAAAAGCTTTCAGTATACCCTTTTCGTTATGTGGACCGTGC
GCCGCCAGGGATGAAGGTGTCGGCGTGGGGGGGGGTGGGGGGGTGAGCAC
TAGCGAACGCGATGACTTGTTTGAGAGGCGGAGAGAGTAGAGGGGTGGTT
GGGGGGGGAGGGCGCCGACTATCATAACACCCCCCCCATTAATCTCTTAT
TATGTCCGCGGACTGGGGGCAATTATTTTTTTTTGTAGGAAGGACACGTG
ACGAGGGGTACTAACAAATAAGCCAGAGCGAGAGGGCGAGGTGAGAAACT
AAAACAAGGGTCTCGATTGTGTCGTATATCAATGTATTAGATCTACACCC
CGGAGTGTTGTCAGCACCTTTGAGCCCGGCTCGCGAACGAGAGGAATACG
TACTTCCGGCGAATTAAAATGAGGAAGTAAAATATAATTAATTTTTGGNN
NAGAGAAACAGATAAAAAATTTTTTCCGGCGCGATGCTNCATNTATTGTC
CANTATNTAGGAANANCATNNTGGTTTNGNCCCGAAAAAAAAAGAACAAA
ATNNTTGGATAAAAAAACCGCCGGNNNGGTTTCCGGNTNTNNCATNNNNA
ATTNANGGATNTANNNTGGTNNNTTTNNACCTGGNNNCTGANNNGTNNNA
NCCCGCNCTANN

Query= MSMg01no471_d23.b1 MSMg01no471_d23.b1 CHROMAT_FILE:
MSMg01no471_d23.b1 PHD_FILE: MSMg01no471_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:26 2005
         (592 letters)



>mm_chr3_62100822_62101813
          Length = 992

 Score = 1006 bits (520), Expect = 0.0
 Identities = 535/540 (99%), Gaps = 1/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 53  tttatttatttatttatttattgcattaatcttctctgatactgaacaggattatgtggt 112
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 253 tttatttatttatttatttattgcattcatcttctctgatactgaacaggattatgtggt 312

                                                                       
Query: 113 cattaaaagaccatgcagcccatgaggaaatgaatgcccactctgtgaccagcacaaggt 172
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 313 cattaaaagaccatgcagcccatgaggaaatgaatgcccactctgtgtccagcacaaggt 372

                                                                       
Query: 173 gccagctcagaattcttcataatcatactcttctgagtctattttactgtgaagcaagca 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gccagctcagaattcttcataatcatactcttctgagtctattttactgtgaagcaagca 432

                                                                       
Query: 233 taacaaagtccatcatggaagagaaaagatttttaaagagactagcatgtaataggattc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taacaaagtccatcatggaagagaaaagatttttaaagagactagcatgtaataggattc 492

                                                                       
Query: 293 aataagcctaaagcaatatcccttgaatatttacatattataaaaaaatatttgcctggc 352
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 493 aataagcctaaagcaatatcccttgaatatttacatattataaaaaa-tattttcctggc 551

                                                                       
Query: 353 tttatgcacttttcagcatttgtttgtatttattttatcttccatttaggttccaatatt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttatgcacttttcagcatttgtttgtatttattttatcttccatttaggttccaatatt 611

                                                                       
Query: 413 cccagagagaaaggagagtcttatttctcttttacatggtatggtatattacccagcaca 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cccagagagaaaggagagtcttatttctcttttacatggtatggtatattacccagcaca 671

                                                                       
Query: 473 ttggaagagagtaaatatttgttgaaagagtagcttcaagtgtgctcactaacatatgct 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 672 ttggaagagagtaaatatttgttgaaagagtagcttcaagtgtgctcactaacatgtgct 731

                                                                       
Query: 533 agttttcatttgtggacaattagtactttgagggaaatgaacagtcctttctcatattca 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agttttcatttgtggacaattagtactttgagggaaatgaacagtcctttctcatattca 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)