BAC Information

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BAC

Clone NameMSMg01-471L21
Chromosome3 (Build37)
Map Location 47,574,321 - 47,574,928
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471L21.T7 (MSMg01no471_l21.b1)MSMg01-471L21.TJ (MSMg01no471_l21.g1)
ACCAG554438AG554439
length7641,408
length of high quality
(start - end)		608 (70 - 677)---
definitionCHROMAT_FILE: MSMg01no471_l21.b1 PHD_FILE: MSMg01no471_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:06 2005CHROMAT_FILE: MSMg01no471_l21.g1 PHD_FILE: MSMg01no471_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCAGAATTAATTCCATATCATATTACAGATGTAAAATGGAATTTTC
CACAATAAATCATAGTTTATATGTAGATTTATTTCCTGATGAATGAAGTA
CATATATTATTATGCATAATTTCTATATTGTCTACAATTGTATTATAAAA
TTTAAATTTAGTATAATTCTACTTTATGGTTAGAATAAAATATAATTCTG
TCACACCATAGAGAAAATTAAACTTCTGAAATCATTTATGGTGTGTTTCA
GAATGTATTGAATTACATTGCCATATGAAATCATAGCTCTATCTATATTC
ATATTACAATATAGATCCTTTTTTGTTTATATCAATTTTCCATTGAAAAA
TAGATAGTATCATTCCCAGTTAGATTTTAACTACTGATTTCAAAGCAGTA
TTTTTATTTTTTATGGTACACAGATTCAAAAAGCAATAGTCAATGTTCCT
TGAACAAATTGTACCTTTTTATATTAACTGAGTTTTATATAATGCACAAT
TAGCATAAAATTACTTAACTGCATCAAAAGAACTATAGCGTAGCCTCTAT
TCTCTAAGAATAAGCAAGAATAAAACTGAACTCTCATGAGCTACTACATT
AAAGATATCTACTTCAGATTTTATGATTCTGTAGATTTGAAAATGAGTTA
AAACCAACCTAAATAATTTAGCAGTAGACATCANGTTTTTGTCCATAAAA
TCATTTCTGTCTAT

TGCGGGGGATGAGAGACCATACTCTCGGTTAATGATGTGGAGGGAATTTC
TATAAAGATCAATTGGGTGCTACACCACTATTAAGGACTCAACACCAACA
AACAACAGCGTAAAAAGACAGGGGTGTCGGCCAGCGAAACCAACTCTTTT
TCCGCGCCCGCCTATTCGGGCCGCGGCGCCCGCGTTATGAACATACCACT
TTAGCGGCGACGAGCAACAATGATGCAAGGGAAGAGCGAAAACGCACATA
ATCTTTATATCATATATTTCACACGATTTACCGGGTCCACGTGTGTCGAC
GGGGATAGCACGCCTCGCGTCCGGGAAGATGTTATGCGTCTGCTCGGACT
CGGACGGTGACTTGTATTTCTGGCTCGCATATCTTCGCCCACCGTCACCG
TCACACACGCACATATATGTGTCGATGTTAGCGCAGGCGAACCAAGCAGG
GAGGGTACGCGCAGGAGCGGCCGTTTGTGATCGCGGACGTATACGCACGG
CATAATATTCATAGCATAAAACGACACATCCACCATCACTTACTAATTCG
CTCATTAAACATAAGATAGCGCCGACAGACAAGGAGACAGAGACCGAACA
TTTGATTGTTTAGCGAGTGAATTTAGGGAGTAAAAGAGCGGCGAGGAGGT
ACGCGCGACCGTATGTAGAAATCCACGGACGTTTTACCCAGCCGCGCTGG
AGTTATATCTCAGAGATACGCGTATTTTTTGCGCGTAGGATTAGATACTG
CGTGATATGTTTAGTGATAAGACGACAAGAGACAGATAGCGTAGACCAGT
GTCGCACCGTCATACGCCAAACCGATAGAGTGGGATTATGCCCTCATCCC
GCGATATATGCGACCCCCGCTTCGCAGACGGTGTGACGAGATGAATATGA
NGTACGCCTCTGAAGATACGAGCGCTCGCGGTTCCTCGGAATCATCAGTG
GAGGGTAGCGGATGAGACGATGTCACTGAACAACGTTGCGCGCACGTCCG
CGTACCGCCCGCACTCGGACAGTGTATGATGAGGGACGTATAAGTAAATA
ACGCGCGGTGATCACTCTCTGCGATGTGATGATACAGGTATGACTGCCTA
GACACACAGTTACAAACTCACGCGCTGTCGATCGAGTGATGATCCGCGGA
TATCCAGCAAGCGGGGAGGATGTGGTATATCGACTCGTGAAGACACGGCG
GTCGCGAGTCAGAATGATATTGCGAGCCCGATGTCAATGACAACACTATT
CGGCACAGTGAGGTGTCGATGCACACTCTCTACATCAGCATCTGTATGTG
ACACGCACTCACCGATATACTGCCGACGTTGGTGAGNGGCGACGATAGTG
AACACGTGGACTCGGGATAGAGACGATATGTGACGGACGTCACGANCGTG
AGTCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_l21.b1 MSMg01no471_l21.b1 CHROMAT_FILE:
MSMg01no471_l21.b1 PHD_FILE: MSMg01no471_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:06 2005
         (608 letters)



>mm_chr3_47573972_47574979
          Length = 1008

 Score = 1176 bits (608), Expect = 0.0
 Identities = 608/608 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcatattacagatgtaaaatggaattttccacaataaatcatagtttatatgtagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tatcatattacagatgtaaaatggaattttccacaataaatcatagtttatatgtagatt 898

                                                                       
Query: 61  tatttcctgatgaatgaagtacatatattattatgcataatttctatattgtctacaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tatttcctgatgaatgaagtacatatattattatgcataatttctatattgtctacaatt 838

                                                                       
Query: 121 gtattataaaatttaaatttagtataattctactttatggttagaataaaatataattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gtattataaaatttaaatttagtataattctactttatggttagaataaaatataattct 778

                                                                       
Query: 181 gtcacaccatagagaaaattaaacttctgaaatcatttatggtgtgtttcagaatgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gtcacaccatagagaaaattaaacttctgaaatcatttatggtgtgtttcagaatgtatt 718

                                                                       
Query: 241 gaattacattgccatatgaaatcatagctctatctatattcatattacaatatagatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattacattgccatatgaaatcatagctctatctatattcatattacaatatagatcct 658

                                                                       
Query: 301 tttttgtttatatcaattttccattgaaaaatagatagtatcattcccagttagatttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tttttgtttatatcaattttccattgaaaaatagatagtatcattcccagttagatttta 598

                                                                       
Query: 361 actactgatttcaaagcagtatttttattttttatggtacacagattcaaaaagcaatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 actactgatttcaaagcagtatttttattttttatggtacacagattcaaaaagcaatag 538

                                                                       
Query: 421 tcaatgttccttgaacaaattgtacctttttatattaactgagttttatataatgcacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tcaatgttccttgaacaaattgtacctttttatattaactgagttttatataatgcacaa 478

                                                                       
Query: 481 ttagcataaaattacttaactgcatcaaaagaactatagcgtagcctctattctctaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttagcataaaattacttaactgcatcaaaagaactatagcgtagcctctattctctaaga 418

                                                                       
Query: 541 ataagcaagaataaaactgaactctcatgagctactacattaaagatatctacttcagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ataagcaagaataaaactgaactctcatgagctactacattaaagatatctacttcagat 358

                   
Query: 601 tttatgat 608
           ||||||||
Sbjct: 357 tttatgat 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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