NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGAACTTACTCATCTGACCCTTGGCTTTTTTGCTTGGGAGACT
TTTGATGACTGCTTCTATTTACTTAGAGGTTATAGGGATGTTTAAATAGT
TTACTTGATCTTGATTTAACTTTGGTAAGTGGTATCTGTCTAGAAAATCA
TACATTTCATTAAGATTTTCAGATTTTTGTGAAGTGCAAGCTTTTGAAAT
AAGACTTAATGATTCTTTGAATTTCCTCAGTGTCTGCTGTGATGTTTCCC
TTTTCACTTCTGATTTCTAATATTTGGATGCTGTCTCTTTCCCTTTTGAT
TAGTTTGGCTAAGGGTTCATCAATCTTGTTTATTTTCTCAAAGAACCAGC
TCTTGGTTTCCTTGAGTCTTTGTATTGTTTTCTTTGTCTTTAACTGATTG
GTTTCAGTCCTGATTTTGATTATTTTCTGCCTTCTACTCCTCTTATGTGT
GCTTGCTTTTCTTTTTCTAGGGCATTCAGGTGTACTTTTTAATTGTTTAT
ACAAGAACTTTCTAATTTCTTTACGGAGGCATTTAGTGCTATGATCTACC
CTCTTAGCACTATTTTCATTGTGTCCCATAAATTTGGGTATGTTGTACCT
TTGTTTTCATTGAATTCTAGAAAGTCTTTCATTTCTTTATTTCTTCCCTG
ACCCAGAGATCATTGAGTAGAGAGTTGTTCAATTCCATTAGTGTGCATGC
TTTTTA

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCTATGTGTACCTATTATTT
GTGTGCAGTGTATGGTGTTGGAATCACCTAGAGTGGTTTTACTGTGGTAG
GTGACAGCACTGTCACTTGGCTCAGTCGTTGACTGATTCATTCAATAAAT
AATCACTGGCATGTCTGAATCATATAATGAGGTGGTGCTGGCCAGAGTCA
GGAGCCACTGTGCATTGACCAGAGGTGCTGGCCAAAGTCAGGGGCCACCA
GCTCCAATGAGTAACCCAGTCTGGTCTGGTAGCCGAGAGTCTCTGGGGAG
GAAAAAGTATTCATTAGGTTTGTAAAGCTTAGGTGTAGAAAGTTGTGACT
GGCTCCTAGCAAATGACCTAGGCAAAAGATAGGAGTGAACATCAGGGCCA
CATGAATCTGGAACAACCACCTCCAGGAGATGCCACAGTTGGAGATGCCA
AGGCCTGTAACTCCATCCTCTTCCTGCATGCGTGGTGAGTTTGTGTTACT
CATGACCCTCTGGGGATCCCATCTCTGTCCTTTCTAGCTATCTTCCCCAG
CTAATGCTTCCTGAGGACTTCTCTGTAACTAGCTTCCTCATAACCTGATA
TCCTTCGGTCAGCCTCTTCCCAAGGTTTTGTTTCATTTAGGGTAAGAAGA
AAACTCAAGTGTGAGTCTCTGGGCTTTGTATACCACTGCTTATGTTCTAA
GCGGCTACAGCAAGATGGAGTGG

Query= MSMg01no471_m10.g1 MSMg01no471_m10.g1 CHROMAT_FILE:
MSMg01no471_m10.g1 PHD_FILE: MSMg01no471_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:09 2005
         (583 letters)



>mm_chr3_27940918_27941900
          Length = 983

 Score = 1073 bits (555), Expect = 0.0
 Identities = 576/583 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttctatgtgtacctattatttgtgtgcagtgtatggtgttggaatcacctagagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tccttctatgtgtacctattatttgtgtgcagtgtatggtgttggaatcacctagagtgg 724

                                                                       
Query: 61  ttttactgtggtaggtgacagcactgtcacttggctcagtcgttgactgattcattcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttttactgtggtaggtgacagcactgtcacttggctcagtcgttgactgattcattcaat 664

                                                                       
Query: 121 aaataatcactggcatgtctgaatcatataatgaggtggtgctggccagagtcaggagcc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 663 aaataatcactggcatgtctgaatcatacaatgaggtggtgctggccagagtcaggagcc 604

                                                                       
Query: 181 actgtgcattgaccagaggtgctggccaaagtcaggggccaccagctccaatgagtaacc 240
           ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 603 actgtgcgttgaccagaggtgctggccaaagtcaggggccaccagcgccaatgagtaacc 544

                                                                       
Query: 241 cagtctggtctggtagccgagagtctctggggaggaaaaagtattcattaggtttgtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 543 cagtctggtctggtagccgagagtctctggggaggaaaaagtattcactgggtttgtaaa 484

                                                                       
Query: 301 gcttaggtgtagaaagttgtgactggctcctagcaaatgacctaggcaaaagataggagt 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ccttaggtgtagaaagttgtgactggctcctagcaaatgacctaggcaaaagataggagt 424

                                                                       
Query: 361 gaacatcagggccacatgaatctggaacaaccacctccaggagatgccacagttggagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaacatcagggccacatgaatctggaacaaccacctccaggagatgccacagttggagat 364

                                                                       
Query: 421 gccaaggcctgtaactccatcctcttcctgcatgcgtggtgagtttgtgttactcatgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gccaaggcctgtaactccatcctcttcctgcatgcgtggtgagtttgtgttactcatgac 304

                                                                       
Query: 481 cctctggggatcccatctctgtcctttctagctatcttccccagctaatgcttcctgagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 303 cctctggggatcccatctctgtcctttctagctatcttccccagctaatgcttcctgaga 244

                                                      
Query: 541 acttctctgtaactagcttcctcataacctgatatccttcggt 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acttctctgtaactagcttcctcataacctgatatccttcggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)