BAC Information

Click to search

BAC

Clone NameMSMg01-471P04
Chromosome3 (Build37)
Map Location 134,894,248 - 134,894,899
singlet/doubletsinglet
Overlap geneCenpe
Upstream geneLOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439
Downstream geneBdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471P04.T7 (MSMg01no471_p04.b1)MSMg01-471P04.TJ (MSMg01no471_p04.g1)
ACCAG554596AG554597
length7181,295
length of high quality
(start - end)		655 (54 - 708)---
definitionCHROMAT_FILE: MSMg01no471_p04.b1 PHD_FILE: MSMg01no471_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:23 2005CHROMAT_FILE: MSMg01no471_p04.g1 PHD_FILE: MSMg01no471_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTATTACTCTCATTTTTATTTTAAGCAAAACTTAGA
GTAAATCTATTCATGACGTGCATCTTTTCTACTTACAGCAGCCTCTTCCG
AGTTTGAAATGTTGAATAACACTCTTGAGTCATTGGCTGAGGTAGAGTGG
AGCTCGGCAACAACACTCCTAAGCGAGGTAACATTAACAGTCCATAGAGC
GTCTGCCCTTAGGCTTGTGTTATTTGGGGCTTTTTTTTTTTTCTTCTTTT
TTAAGAACTTTACGTGTGTGCATGTTTTGCCACTGTGTTTATATGTACCA
CAGCACATCTGGTGCCTGCAGACTCAGCAGAGGACCTCACATCCTCTGGA
ACCAGAATTATAGATGGTTTTAAGCTGCCTTTTGAGTGTTGGGAACAGAA
CCCGGAGTCACTAGAAGAGATGGCATATCAGCCGCTGCATGTAGATCTCT
TGCTAGATGTGCTAACAACTATATCATTGTTAACAGGTCACCCTGCCTGA
CTCAACATCAGAGACAAATTTGATCCTAGGGAAGACAGTTTTCCTTTTAT
ATCTGATTGACAGCTGTGTGATATCTAAAGCTAGACTTAGCATTGTGGAA
AGCAGGTGTGGGCTAATCGGTGGCAACCTGCTTACAACTCTTACTGTCAA
ATCTTAGGATCTGTGAAT

TTTCCTCCTACCAAATGACAAGGAGAGGCGAGGAGTCCGAAGGGGGGCCC
GCCGTCTGCTCCGCGCCACAATTTTTGGCGGGGAGCGCGACTCTCTTTTA
TGAGCCCCGAGGGAGGAGCAGCNCTCTCGTTGGTTCTCGGCGCCCTATTC
CTCACCACACGGGAAAATATACAGGAACAGAAGAAGGAGACTCTCTTTCT
CTGATGAGGACTCGCGGCGGCACACTTATTAGATAGTACTGAGATGATGT
AAAACAAAGTGAACCGGACGGTTCGTGCGTGAGGTACCTAATAGAGTCTT
CCTAGTGTTCCGGCGTATCGTTTATCCTCTTTGGCTTGCTTTCACCGACA
TAACATATTACAACTATCCTCTTCACGTCCCTTTGGGCGCGGTTGGCTTT
CGTGTTCTGTCACGTCAATGTGTAACTCGCCCACGCTCCGCGCCGCAGGC
TCATCTGATTCCGCGTTCCGACTAATTGCGCGCACACACCGCGGGCTTTT
ATATATTGTGTATAGTGCGGCGGCTGTACGCCGCTTACGCATACCCCACC
TATACACAATATAATAAAAACTAACCGCAGCGTATATACTATAATAATTT
GCGCTGACATGACCGGTTCGGCATTGTGAAGGTCTGTACTAATTTGTCTT
ACGCGGTTGGCCTCCGCGCGCGCGCTCTCTATCCGTACCCATATCCGGCG
CCCGCCTTTCTCTCTTAATCTGCACACTCGCCGCTATAAATATACCAGCG
ACGGTACCGGGGTCTCTTGTCCTCGTCCCTAGTAGTCGCTACGGACGCCT
GTATGCAGTAAGTCGAAGCCGCGCGCGCGATCAAGATATACAAGTACACA
GAGACTCGCGCCGGATCTTATCCTGTACCACCGCGCGCCGCTCCTTCTGT
CCCACCGCGCGCCGTGTTCGCCGCGCGATTTATCGCTCTCACACTCCCGC
CACATCGCGCTTGCGCGAAGGCCAACACGCGGGATTAGATATCATATCGC
ATATATATTTGGTAGCGTCGTTACTCTCGTACACCGCCCTACTTTCGCTT
CGCGCCGTTCGCGCGTAACACTATTATATACTCTACTCGCTTGGTCAGTG
CTGCGAGGCTACACGCGGCTNATTTTTGCCACAATATATGTCGCTCCAGC
GATATACGCGCCGCACCACGTCCATACCGCTACTTAATGTTACTCCTACT
ACTACCGTCAATATACGATACTGCAGTATTTAGACTGCCGCGCGCTGTCA
CGCGCGAGACGCAACGCATTGGAACCNGCTCTTATTAGATACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_p04.b1 MSMg01no471_p04.b1 CHROMAT_FILE:
MSMg01no471_p04.b1 PHD_FILE: MSMg01no471_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:23 2005
         (655 letters)



>mm_chr3_134894044_134895099
          Length = 1056

 Score = 1199 bits (620), Expect = 0.0
 Identities = 644/652 (98%), Gaps = 1/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttattactctcatttttattttaagcaaaacttagagtaaatctattcatgac 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaattctttattaatctcatttttattttaagcaaaacttagagtaaatctattcatgat 264

                                                                       
Query: 65  gtgcatcttttctacttacagcagcctcttccgagtttgaaatgttgaataacactcttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgcatcttttctacttacagcagcctcttccgagtttgaaatgttgaataacactcttg 324

                                                                       
Query: 125 agtcattggctgaggtagagtggagctcggcaacaacactcctaagcgaggtaacattaa 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 agtcattggctgaggtagagtggagctcggcaacaacgctcctaagcgaggtaacattaa 384

                                                                       
Query: 185 cagtccatagagcgtctgcccttaggcttgtgttatttggggcttttttttttttctt-c 243
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct: 385 cagtccatagagtgtctgcccttaggcttgtgttatttagggctttttttttttttttcc 444

                                                                       
Query: 244 ttttttaagaactttacgtgtgtgcatgttttgccactgtgtttatatgtaccacagcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttttaagaactttacgtgtgtgcatgttttgccactgtgtttatatgtaccacagcac 504

                                                                       
Query: 304 atctggtgcctgcagactcagcagaggacctcacatcctctggaaccagaattatagatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctggtgcctgcagactcagcagaggacctcacatcctctggaaccagaattatagatg 564

                                                                       
Query: 364 gttttaagctgccttttgagtgttgggaacagaacccggagtcactagaagagatggcat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttttaagctgccttttgagtgttgggaacagaacccggagtcactagaagagatggcat 624

                                                                       
Query: 424 atcagccgctgcatgtagatctcttgctagatgtgctaacaactatatcattgttaacag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcagccgctgcatgtagatctcttgctagatgtgctaacaactatatcattgttaacag 684

                                                                       
Query: 484 gtcaccctgcctgactcaacatcagagacaaatttgatcctagggaagacagttttcctt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtcaccctgcctgactcaacatcagagacaaatttgatcctagggaagacagttttcctt 744

                                                                       
Query: 544 ttatatctgattgacagctgtgtgatatctaaagctagacttagcattgtggaaagcagg 603
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 745 ttatatctgattgacagctgtgtgatatctagagctagacttagcattgtggaaagcagg 804

                                                               
Query: 604 tgtgggctaatcggtggcaacctgcttacaactcttactgtcaaatcttagg 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtgggctaatcggtggcaacctgcttacaactcttactgtcaaatcttagg 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space:   674670
Effective search space used:   674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |