Query= MSMg01no472_a20.b1 MSMg01no472_a20.b1 CHROMAT_FILE:
MSMg01no472_a20.b1 PHD_FILE: MSMg01no472_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:33 2005
(544 letters)
>mm_chr3_52587366_52588311
Length = 946
Score = 1040 bits (538), Expect = 0.0
Identities = 544/546 (99%), Gaps = 2/546 (0%)
Strand = Plus / Plus
Query: 1 catgtagactggaactcagctaaacgtaaccccttggaagcacagttgagaagcaccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtagactggaactcagctaaacgtaaccccttggaagcacagttgagaagcaccaag 260
Query: 61 acatgttgcttctgaggaggatcctagaaaattgtaggacagtatttataccttaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgttgcttctgaggaggatcctagaaaattgtaggacagtatttataccttaaaaaa 320
Query: 121 aa-cacccttcttaaaatgtctagaggcatcttatacaaaatataggagtaccacaaaag 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcacccttcttaaaatgtctagaggcatcttatacaaaatataggagtaccacaaaag 380
Query: 180 gaactggatttggacgtgttcatactttgtaagtgacggatgcagagggagacaaatttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactggatttggacgtgttcatactttgtaagtgacggatgcagagggagacaaatttt 440
Query: 240 tactttattttctgcatatttttaaattactattatttgtagaatatgctttaaataatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactttattttctgcatatttttaaattactattatttgtagaatatgctttaaataatg 500
Query: 300 aaaaaggtataagtataatgatataacctttaaagctaaatactacaagctgccctcgta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaggtataagtataatgatataacctttaaagctaaatactacaagctgccctcgta 560
Query: 360 gtctgtatagctctgagttattaatgtagctatttagcatctcctaacaggaagacagtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctgtatagctctgagttattaatgtagctatttagcatctcctaacaggaagacagtc 620
Query: 420 atgtatacaatagaaaccaggcaccacatagcaatttctttaaagatttaaataggaatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtatacaatagaaaccaggcaccacatagcaatttctttaaagatttaaataggaatg 680
Query: 480 gaaggaaaggaagaaatgtggccttaaaacagtcttctacatttttttt-cacaaatcac 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 gaaggaaaggaagaaatgtggccttaaaacagtcttctacatttttttttcacaaatcac 740
Query: 539 tttctt 544
||||||
Sbjct: 741 tttctt 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 946
Length adjustment: 10
Effective length of query: 534
Effective length of database: 936
Effective search space: 499824
Effective search space used: 499824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_a20.g1 MSMg01no472_a20.g1 CHROMAT_FILE:
MSMg01no472_a20.g1 PHD_FILE: MSMg01no472_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:33 2005
(483 letters)
>mm_chr3_52768913_52769795
Length = 883
Score = 903 bits (467), Expect = 0.0
Identities = 479/483 (99%)
Strand = Plus / Minus
Query: 1 agggcagagaatgcacattcttctttgtaaatcttgttatttttgccctctggaggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agggcagagaatgcacattcttctttgtaaatcttgttatttttgccctctggaggaagc 624
Query: 61 agactggcgaagtgcctccagcctgtgacttctcagattcaaacgacatggaggtgagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agactggcgaagtgcctccagcctgtgacttctcagattcaaacgacatggaggtgagaa 564
Query: 121 gatacatagagcccaggggtcctgaggaatcagagggataaatctcagctgatgcctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gatacatagagcccaggggtcctgaggaatcagagggataaatctcagctgatgcctctg 504
Query: 181 agagaccgagagacagccaggggccgttgaatagactctttcagactcctcctgtggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agagaccgagagacagccaggggccgttgaatagactctttcagactcctcctgtggctc 444
Query: 241 catctttgcagagcctcactgggagtctgtcctgagctcacctcataaatgggtctctga 300
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 443 catcaaagcagagcctcactgggagtctgacctgagctcacctcataaatgggtctctga 384
Query: 301 tgtcataaaaaggaacccccatcttgatttcacccctaataactgacctatcatgaatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtcataaaaaggaacccccatcttgatttcacccctaataactgacctatcatgaatga 324
Query: 361 atactctaagaatgttctagaatctagtaaataaatagtctatacagatctcatcctaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atactctaagaatgttctagaatctagtaaataaatagtctatacagatctcatcctaca 264
Query: 421 ttaagtcaaattaacaaccatttacgcagcagggcccatgaaaagtctcaatatttcctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttaagtcaaattaacaaccatttacgcagcagggcccatgaaaagtctcaatatttcctg 204
Query: 481 att 483
|||
Sbjct: 203 att 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
