Query= MSMg01no473_a14.b1 MSMg01no473_a14.b1 CHROMAT_FILE:
MSMg01no473_a14.b1 PHD_FILE: MSMg01no473_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:54 2005
(638 letters)
>mm_chr3_122195473_122196511
Length = 1039
Score = 1174 bits (607), Expect = 0.0
Identities = 628/635 (98%), Gaps = 1/635 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcttttctc-gcgcatggaagaaataagccgtgcttgtctcttttgggtttag 63
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcttttcccagtgcatggaagaaataagccgtgcttgtctcttttgggtttag 264
Query: 64 tgcattttctaaagcttagctgccccagtcttcagtctgaaatcagtctccttcagtttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcattttctaaagcttagctgccccagtcttcagtctgaaatcagtctccttcagtttg 324
Query: 124 aaaagaaaaaggggggcaagggggagcttttcagtcccttggtgtttcatcaaaataaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaagaaaaaggggggcaagggggagcttttcagtcccttggtgtttcatcaaaataaaa 384
Query: 184 tgagcagctagagcaatagcttcctgatccggcagggtgggaacgcagagaggagacctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagcagctagagcaatagcttcctgatccggcagggtgggaacgcagagaggagacctt 444
Query: 244 gcccagaggatgagtgtggatgaaagtcagaggcagtctggcatcaaagggagccgtggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcccagaggatgagtgtggatgaaagtcagaggcagtctggcatcaaagggagccgtggg 504
Query: 304 ctccgatcagagggactctaatgtaattagtttggatgtaggattaagttcctgcttgca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctccgatcagagggactctaatgtaattagtttggatgtaggattaagttcctgcttgca 564
Query: 364 gggtgctctacttcaaaatgccaatctgaaaaaattgcaattaaattagtcccttttgtc 423
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 565 gggtgctctacttcaaaatgccaatccgaaaaaattgcaattaaattagtccctttcgtc 624
Query: 424 cacacacgggagcggaattttaatgggtgattctcagaagctccgacaagcagagaagag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacacacgggagcggaattttaatgggtgattctcagaagctccgacaagcagagaagag 684
Query: 484 ctccggagagcgtctctttcctgattcctattcatggcgtctgagcctcttttgataaga 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctccgaagagcgtctctttcctgattcctattcatggcgtctgagcctcttttgataaga 744
Query: 544 gtttgataagtttgggtaatgaataaaatgaaatctcttggacttggggctctctggagt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 gtttgataagtttgggtaatgaataaaatgaaatctcttggacttggggctctctggggt 804
Query: 604 tttgatggttttcctgtctgcgagaacatctgatg 638
|||||||||||||||||||||||||||||||||||
Sbjct: 805 tttgatggttttcctgtctgcgagaacatctgatg 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_a14.g1 MSMg01no473_a14.g1 CHROMAT_FILE:
MSMg01no473_a14.g1 PHD_FILE: MSMg01no473_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:54 2005
(538 letters)
>mm_chr3_122317656_122318593
Length = 938
Score = 978 bits (506), Expect = 0.0
Identities = 530/538 (98%), Gaps = 1/538 (0%)
Strand = Plus / Minus
Query: 1 tcaggctcctagagggcagcgatcatgtcttactcatcattctttcattgtcagcttcat 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcaggttcctagagggcagcgatcatgtcttactcatcattctttcattgtcagcttcat 488
Query: 61 tactgtttcataagcaagttaccaacatgcttcttgacatagagcctggcactgatggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tactgtttcataagcaagttaccaacatgcttcttgacatagagcctggcactgatggga 428
Query: 121 cctttgaataaatgcttctgggccagcctgatcatagtggttagatttgacttgcattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cctttgaataaatgcttctgggccagcctgatcatagtggttagatttgacttgcattaa 368
Query: 181 gtgtaaggagcttgaaagcagtgagtcggagatagggaccaagcacagaggctggtctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtgtaaggagcttgaaagcagtgagtcggagatagggaccaagcacagaggctggtctgg 308
Query: 241 ctgactgcttgattcaggaacatggtatctatgtgtctgtacacatgtagctagtcatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctgactgcttgattcaggaacatggtatctatgtgtctgtacacatgtagctagtcatta 248
Query: 301 gcataaaatcaacctactttttgaaccattaaaaaaaaccacagaagggggctgcagagg 360
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 247 gcataaaatcaacctagtttttgaaccattaaaaaaaaccacagaagggggctggagagg 188
Query: 361 tggctcagccgtcaagagcactgactgctcttccagaggtcctgagttcaattcccagca 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 187 tggctcagccgtcaagagcactgagtgctcttccagaggtcctgagttcaattcccagca 128
Query: 421 accatatggtggctcacaaccatctgtaatgggatctgatgtcctcttctggtgtgtctg 480
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 127 accatatggtggctcacaaccatctataatgggatctcatgtcctcttctggtgtgtctg 68
Query: 481 aggacagctacagtgtactcatatacataaaataaataaataaatcttttaaaaaaac 538
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 67 aagacagctacagtgtactcatatacataaaataaataaataaatcttt-aaaaaaac 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
