CCCCCCCCCCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAG
AGCATCCGCGGAATTCTTTTCTATTCCCAATGACATTCTTCATATTGATG
GTCAGCACCATGACACAAGTCATCCAGAATCTTAAAAGACCCCGTGTGTT
ACAGCAGTCTTGAGCAAGAAAAACAAGGCTGATGGAATCGGAATACTTGG
CATTATGACAGTAGAAGGCATCAGTTGAAGCAGGTTTGGTACTGACATAA
AACAGGCAGATCACAAAATAGGTTAATGCTCAAATAATTCCCCATAATTA
GAACCAGCTAATTTTTAACAAAAGCCCTAAGAACATACTTTGAGATCTTT
TAAACAAATGATACAAAATAGCTGGGTTATGCATAAAGAAAACAAAGGGA
CTTCTATCATTCATATATACACTGCTCAGCTCAAAATAAGTCACGAAAAC
GTGAGACTTGAGACTCTAAAACTGCCAGAAGAATGTATGGTAAAGGCATT
ATGGAGCATTTGCATGGGGAGATGGTTTTATGAGGCCCTCCCAAACAAAA
TACAGGCAACGATTCCAAAAGCTGACCAGTGGTAAAACGCCAGATTATAT
CCAACTTACTTCAAAACAACTTTAGCATTAACAGGCAGTGTGTCTTATAA
TATACAACTTATCTCCTACGCCATCTGTCCCATCAAGAACTATATTGTCT
ACGAAATCTACTCCTCAACTCCCCCCCTCCTTCTCCTTT

TCTCTTCCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAGGAA
GTAGGAGTGGGTGGGTTGAGGAGCAGGGCAGGGGGAGGGTATAGTAGGCC
TGACGTTCTCATTACCGCCATTTTTCATCCTGGTTTTACCTATGATAGCG
TTGCCTAATTGCTTGCGCCACAGCTTATTTTCGACCTCTTTCACATGCTT
GACACTCTGTTTTTCTACCATCGCCTACGCTTCTCCTTCGCTGTACTCTC
CTTTCTGCCCATTCCTGTTCCCTGCTGATTTTCTTGTTTTCCTGTTACTT
TCTTACATTCCGCTCCTCTCATCTCTTCCTTCTCCCCTTCTTTCCTCTTC
TCTCTCCCCTTCCTTCCCTTTTCCCCTTCCTCTCTTCCCCTCCCCTTTTT
TTTCTTTCCCCCCTCTTTCCCCTTCCCTCTCTTTTTTCCTCTCCTCTCTC
CTCCCCTTTTTCTCCCCTTTTTCCCTCCCCTTTTTTTTCCCTCCCTCCTT
CTCTTTTCTCTCTTCTCCCCCCTCCCTTTCCTTTTTTTCTTCCCCCCCTT
TTTTTTTTTTTCCCCCCCCCCTTTTTTTTTTCTCTTCCCCCTCTCCCTTC
CTCTTTTCTTCTTTTTCCTTTCCCCGCTCTCCCTCCTTTTCCCCTTTCCT
CCTTTCCTTTGTTTCCCCCCTTCCCTCTCCTTCTTTTTTCCCCTTTTCTC
TTTTTCTTTCCCTCTCGCCCCTTTCCCCTTTTTTTTTTCCCTCTTCCCTT
TTTTTTTTCTCCACTTTCTTTTTN

Query= MSMg01no475_i02.b1 MSMg01no475_i02.b1 CHROMAT_FILE:
MSMg01no475_i02.b1 PHD_FILE: MSMg01no475_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:18 2005
         (481 letters)



>mm_chr3_139932953_139933833
          Length = 881

 Score =  853 bits (441), Expect = 0.0
 Identities = 465/473 (98%), Gaps = 1/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttttctat-tcccaatgacattcttcatattgatggtcagcaccatgacacaag 64
           ||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttcaaaatgccaatgacattcttcatattgatggtcagcaccatgacacaag 264

                                                                       
Query: 65  tcatccagaatcttaaaagaccccgtgtgttacagcagtcttgagcaagaaaaacaaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatccagaatcttaaaagaccccgtgtgttacagcagtcttgagcaagaaaaacaaggc 324

                                                                       
Query: 125 tgatggaatcggaatacttggcattatgacagtagaaggcatcagttgaagcaggtttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatggaatcggaatacttggcattatgacagtagaaggcatcagttgaagcaggtttgg 384

                                                                       
Query: 185 tactgacataaaacaggcagatcacaaaataggttaatgctcaaataattccccataatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactgacataaaacaggcagatcacaaaataggttaatgctcaaataattccccataatt 444

                                                                       
Query: 245 agaaccagctaatttttaacaaaagccctaagaacatactttgagatcttttaaacaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaccagctaatttttaacaaaagccctaagaacatactttgagatcttttaaacaaat 504

                                                                       
Query: 305 gatacaaaatagctgggttatgcataaagaaaacaaagggacttctatcattcatatata 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatacaaaatagctgggttatgaataaagaaaacaaagggacttctatcattcatatata 564

                                                                       
Query: 365 cactgctcagctcaaaataagtcacgaaaacgtgagacttgagactctaaaactgccaga 424
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 cactgctccgctcaaaataagtcacgaaaatgtgagacttgagactctaaaactgccaga 624

                                                                
Query: 425 agaatgtatggtaaaggcattatggagcatttgcatggggagatggttttatg 477
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaatgtatgggaaaggcattatggagcatttgcatggggagatggttttatg 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)