BAC Information

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BAC

Clone NameMSMg01-475I07
Chromosome3 (Build37)
Map Location 6,482,222 - 6,482,546
singlet/doubletsinglet
Overlap genenone
Upstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
Downstream gene1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475I07.T7 (MSMg01no475_i07.b1)MSMg01-475I07.TJ (MSMg01no475_i07.g1)
ACCAG557326AG557327
length794729
length of high quality
(start - end)
331 (51 - 381)422 (78 - 499)
definitionCHROMAT_FILE: MSMg01no475_i07.b1 PHD_FILE: MSMg01no475_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:20 2005CHROMAT_FILE: MSMg01no475_i07.g1 PHD_FILE: MSMg01no475_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAT
CCGCGGAATTCTTCAACTGTTTACTCAACCAGGTCATAGGTTTGTAAGAA
ATGGAAACAATACATACACTCTCTGCTATGTTTTTATTAAACAGTGGTTT
TACTGGCTTATTGAGCATCTACAAACCTTTAGAATGAGATTTGTCTGCTT
AGAGTAAAATAGTTTATAAATGAAAGCTTTATGTTATACTTCCACGAGCA
ATCAAATATCTTTTAAAAGGATATAAACATCTATTTTTAAAATGGATTCC
AACATGAATAGTGGGACAGGTATTTGACAGTTGTATCAAAGTTGGCTTCC
TTCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCNCNNTNTNCCCCCCTC
CCNCCCCCCTTCTCTTTCTCTTTTCCCCCCTTCTTCCCCTTTTTCCTTTT
TCTCTCCNCTTTCCCCCTCCCCTCCCCCTTCCTTTCTTCCCTCTTCCCCC
CTTTTCCTCCCCCTCCTCTCCCTTCCCCTTTTCTCCCTCCTTTCTCCTTT
CTTCTCCCTTTCTTTTTTTTCCCCCTCTTCTCTCCCTCCCTTTTTTTCTC
CCTTTCCCCCCTTTTTCCCTTCTCCTCCCCTCTTTTTTTTTCCTTTTCCT
CCCCCCCCCTNNCCTTCTTCTTTTTCCCCCTTCCCTCTTCCCTTTTCTCT
CCCCTCTTTTTCTCTCTTTTTTTTCTCTCTTTCTTCTCCCTTTTTCTCCC
CCCCTCTTCCCTCCCCTTTTTTTCCCTCTTTCTTTCTCCCCCCN
NNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTCAGAGACTTGACATTCT
TGTCATATAGACCTTTCACTTTCTTAGTTAGAGTCACACCAAGGTACTTT
ATATTATTTGTGAATATTTTGAAGGTAGTTATTTCCCTAATTTCTTTGTC
AGCTTGTTTATCCTTTGTGTAGAGAGAGGCCACTAATTTGTTTGAGTTAA
TTTTATATTCAGCTACTGCACTGAAGTTGTTTATCAGGTTTAGTAGTTCT
CTGGTGAAATTTTTGGAGTCACTTATAAATACTATCATATCATCTGCAAC
TAGTGATATTTTCACTCCTTTCTTCCCAATTTGTATTCCTTTGATCTCCT
TTCATTGTCTAATTGCTCTGGCTAAGACTTCAAGTATTGTATTGAATAGG
TAGGGAAAGATTGAGCAGCCTTATCTAGTCCCTGATTTTAGTGGGATTTC
TTCCCGTTTCTCACCATTTATTTTGGTCCTGGCTACTGGTTTGCTGCATA
TTGGCTTTTATCTTTGTTATCTATGGGCCCTGATGTCCTGATTTTTTCTA
CAACTTCATCTTCAACGTGTGTCCTACTTTTTCCTTCGCCCCCTCCCTCT
CCCCCCTTATTGTCCACTCGCTTCTCCCCTCCCCCTCTTCTCCTCGCTAC
CGATCCTCTCCTGATTCGTCTCTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_i07.b1 MSMg01no475_i07.b1 CHROMAT_FILE:
MSMg01no475_i07.b1 PHD_FILE: MSMg01no475_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:20 2005
         (331 letters)



>mm_chr3_6482018_6482747
          Length = 730

 Score =  547 bits (283), Expect = e-160
 Identities = 316/327 (96%), Gaps = 2/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcttcaactgtttactcaaccaggtcataggtttgtaagaaatggaaacaataca 64
           |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaa-tcttcaactgcttaatcaaccaggtcataggtttgtaagaaatggaaacaataca 263

                                                                       
Query: 65  tacactctctgctatgtttttattaaacagtggttttactggcttattgagcatctacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacactctctgctatgtttttattaaacagtggttttactggcttattgagcatctacaa 323

                                                                       
Query: 125 acctttagaatgagatttgtctgcttagagtaaaatagtttataaatgaaagctttatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 acctttagaatgagatttgtctgcttagagtaaaatagtttataaatgaaaactttatgt 383

                                                                       
Query: 185 tatacttccacgagcaatcaaatatcttttaaaaggatataaacatctatttttaaaatg 244
           || |||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384 tacacttccacaaccaatcaaatatcttttaaaaggatgtaaacatctatttttaaaatg 443

                                                                       
Query: 245 gattccaacatgaatagtgggacaggtatttgacagttgtatcaaagttggcttccttcc 304
           ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 444 gattccaacatgaatagtgggacaggtatttgacagttgaa-cgaagttggcttccttcc 502

                                      
Query: 305 atcctccctccctccctccctccctcc 331
           |||||||||||||||||||||||||||
Sbjct: 503 atcctccctccctccctccctccctcc 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space:   232162
Effective search space used:   232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)