Query= MSMg01no475_l14.b1 MSMg01no475_l14.b1 CHROMAT_FILE:
MSMg01no475_l14.b1 PHD_FILE: MSMg01no475_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:36 2005
(249 letters)
>mm_chr3_131758910_131759559
Length = 650
Score = 468 bits (242), Expect = e-136
Identities = 248/250 (99%), Gaps = 1/250 (0%)
Strand = Plus / Plus
Query: 1 caccaacccgaatacaagcccttcaaataactcaaagccatgttttcagtaaaccctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccaacccgaatacaagcccttcaaataactcaaagccatgttttcagtaaaccctatg 260
Query: 61 tcagctgagctctgtgtaagaattaaattcattgtcttgagttgattaaagaaaaaaaaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tcagctgagctctgtgtaagaattaaattcatcgtcttgagttgattaaagaaaaaaaaa 320
Query: 121 -ctgatgggagataaattgtgtgtagttcttttagccgctggaaatctgtgcatgttcag 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgatgggagataaattgtgtgtagttcttttagccgctggaaatctgtgcatgttcag 380
Query: 180 atgtgttatcaaagattacagcaccgtgatgacaactgtatccgtgggttctaaacaaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgttatcaaagattacagcaccgtgatgacaactgtatccgtgggttctaaacaaaa 440
Query: 240 ttaatgaagg 249
||||||||||
Sbjct: 441 ttaatgaagg 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_l14.g1 MSMg01no475_l14.g1 CHROMAT_FILE:
MSMg01no475_l14.g1 PHD_FILE: MSMg01no475_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:36 2005
(357 letters)
>mm_chr3_131839354_131840110
Length = 757
Score = 652 bits (337), Expect = 0.0
Identities = 352/357 (98%)
Strand = Plus / Minus
Query: 1 actaccatatttaggccaagagacgcccaaggagcaggcaatgtcagcatccaggggctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 actaccatatttaggccaagagacgcccaaggagcaggcaatgtcagcatccaggggctc 498
Query: 61 gattcattggccagaacctaaagctccacctgacagcagctcaagactgaaaggaaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gattcattggccagaacctaaagctccacctgacagcagctcaagactgaaaggaaacat 438
Query: 121 ggtcattccaaaatactaatggaggctgtgagagtaggaagctgtttaagcctagccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 437 ggtcattccaaaatactaatggaggctgtgagagtaggaagctgtttaagcctagccgga 378
Query: 181 tgcatccgacaaagagtggtgggaaatgtggaaatacagcctacaagaaaccatgagtca 240
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 377 tgcatccgacaaagagtggtgggaaatgtggaaatacagcctacaaggagccatgagtca 318
Query: 241 gatcagagcagagagatgtcatccagcctccctcagggccatcaggctctgggacaacca 300
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 317 gaacagagcagagagatgtcatccagcctccctcagggccatcaggttctgggacaacca 258
Query: 301 aggacttactgtaaaatctgtgaggagattacaaatctgggtattgtatgcacacac 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aggacttactgtaaaatctgtgaggagattacaaatctgggtattgtatgcacacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space: 260304
Effective search space used: 260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
