ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCACCATTTTCCAAAAATTTAATTTNTCCCAAGATCTAAG
GAACCCCTTTGCCAACACGTACACTTATTACAAGCAGGGAAATAAATAAG
TTTGTTTTACAGAAACAATAATATTTTCCAAATGCTAACATAGTCCAAAG
AAAGCAATGTGCCAAGCCTCATCCATCTGCTTGCTCACTAATGAGTGAAT
GACAAAGTGACTTATTAAATGAGTATTTCATGGCTATTCCCCAGTGTTGA
CTCAAAAATTCATAGCCTGTCCCCAAATTACACTTTTCACTCTTGGCTCC
ACTGAGGTCTTTCTGATCTTCCTTATAAGCTATTCTACCTTTTTCCCTCC
AGATTCATCTTTCTGCTAGACACATGCTGTGTGTACAATACTTACTATAT
GAGTAGTCAACCTCTGCTAATATGGTTATATGCAGAAAGTTATCAATTAT
GAAAATATGTAATCTAGGAAGCTTTTCTAAATCACATGTTAATGGAAAAT
TAATTTAATAATTTTAATGTTGGAAAAACAAAATTGCTCTAGTTAATCTG
AAGGCTTTCTCTCATGGCTGTATGTAAGTCACCAAATAGAANAACCGCAA
TTACTAATGAATTCCATACTTATGTTCATCTGGTTAAACCCTATGCATTT
AGAAAGGAATATGCCCAAATTTTATTTGTTTTTTCTTGACTACCATGAAC
CGGTAAAAACCAGCCCCTTAATTTGA

CCCCCATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTTTTGAAACTCACATGATTAC
AAAATTGAAAGGGAAAACTCTCACTCCCACAGGTTGTCCTTTGACCTCCA
AACACACCACAATACAGTCACACACACATGGAAATACAAAGGAAAAAAAA
AGTTTATAACAGACTTATCCTGAGCCAGAATGCTCCATACCCAAATACTG
CCAGGAGAAAGTAGGTCTCAAAGGAGTGCTGAGATGTCTATGAGCACAGG
GAAGACCACCACTTCTGCTCCAACAGACCTGCCCAGAGACCTCAGGACAC
AAGAATCAAGGAGCAGCCTGGGACGGGATCTTTCCTGTTTCCATCTACAC
CCGGAGCTGATCCTGTGCCATAGCACTCAATACCCATATACCACCAGGAG
AGAGCTGGTCTCCCAGGAGTGCCAACACAGCTGTGAGCACAGGTAAGACC
ACCACTTCTGCTCACATTCCTGACCCCAGAAGGATGAGCCAGAGCCATCC
TGGACCCGGGACCCACGAACACTCAGGAACAGGATACTTCCTGGTTAACC
CCCGGACCCCGGGGAAAAGCTCTCCTTACCCAAATTCCTTCCACAAAAAA
ATGGCCCCCCCGGAAAACTGAAAAAAAACTTTTGTCGGTGGGAAAATTCC
ACCTTTAACCATCCCTACCCCTCAACCCCAGGTTACCCATCTTGTATACC
CTCGGCCCCCATCCCTTCTCTTCTT

Query= MSMg01no475_n17.b1 MSMg01no475_n17.b1 CHROMAT_FILE:
MSMg01no475_n17.b1 PHD_FILE: MSMg01no475_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:46 2005
         (506 letters)



>mm_chr3_5370171_5371070
          Length = 900

 Score =  849 bits (439), Expect = 0.0
 Identities = 490/507 (96%), Gaps = 8/507 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaagatctaaggaacccctttgccaacacgtacacttattacaagcagggaaataaat 60
           |||||||||| ||||||||| ||||||||||| |||||||  ||||| ||||||| ||||
Sbjct: 201 cccaagatct-aggaacccc-ttgccaacacggacactta-gacaag-agggaaagaaat 256

                                                                       
Query: 61  aagtttgttttacagaaacaataatattttccaaatgctaacatagtccaaagaaagcaa 120
            |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||
Sbjct: 257 -agtttgttttacagaaacaat-ttattttccaactgctaacatagtccaaagaaagcaa 314

                                                                       
Query: 121 tgtgccaagcctcatccatctgcttgctcactaatgagtgaatgacaaagtgacttatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgtgccaagcctcatccatctgcttgctcactaatgagtgaatgacaaagtgacttatta 374

                                                                       
Query: 181 aatgagtatttcatggctattccccagtgttgactcaaaaattcatagcctgtccccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatgagtatttcatggctattccccagtgttgactcaaaaattcatagcctgtccccaaa 434

                                                                       
Query: 241 ttacacttttcactcttggctccactgaggtctttctgatcttccttataagctattcta 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 435 ttacacttttcactcttggctccactgaggtctttctgatcttcctcataagctattcta 494

                                                                       
Query: 301 cctttttccctccagattcatctttctgctagacacatgctgtgtgtacaatacttacta 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 495 cctttttccctccagattcatcttcctgctagacacatgctgtgtgtacaatacttacta 554

                                                                       
Query: 361 tatgagtagtcaacctctgctaatatggttatatgcagaaagttatcaattatgaaaata 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tacgagtagtcaacctctgctaatatggttatatgcagaaagttatcaattatgaaaata 614

                                                                       
Query: 421 tgtaatctaggaagcttttctaaatcacatgttaatggaaaattaatttaataattttaa 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 615 tgtaatctaggaagcttttctaaatcacgtgttaatggaaaattaatttaataattttaa 674

                                      
Query: 481 tgt-tggaaaaacaaaattgctctagt 506
           | | |||||||||||||||||||||||
Sbjct: 675 t-tatggaaaaacaaaattgctctagt 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 900
Length adjustment: 10
Effective length of query: 496
Effective length of database: 890
Effective search space:   441440
Effective search space used:   441440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)