BAC Information

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BAC

Clone NameMSMg01-475P08
Chromosome3 (Build37)
Map Location 38,978,969 - 39,148,756
singlet/doubletdoublet
Overlap geneLOC100041432
Upstream geneEG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
Downstream geneLOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475P08.T7 (MSMg01no475_p08.b1)MSMg01-475P08.TJ (MSMg01no475_p08.g1)
ACCAG557663AG557664
length737768
length of high quality
(start - end)
203 (305 - 507)293 (81 - 373)
definitionCHROMAT_FILE: MSMg01no475_p08.b1 PHD_FILE: MSMg01no475_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:54 2005CHROMAT_FILE: MSMg01no475_p08.g1 PHD_FILE: MSMg01no475_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,978,969 - 38,979,171)(39,148,464 - 39,148,756)
sequence
GACTACCTTATTCAGACAATCCGCGGAATTCCAGAAGTTTTCGACAAATA
GCAGATCAATACTAAGAATAGACTGAGAAGAGAGACAAGAATCTGTAGGT
GTTGGGACTCAGATGGAGCCAGGGTCTGCTGAGAGACAGCTACTACACCC
CATGTTTAAAATGGTTACTCTGAAAATTGGCCAACTCTTAGAGGAACAAA
GAAGCAGTTGAAGTAAATGGTAGGGGCTCTCCAAGGACAGGAGGATCTTG
ATATTGCCACAAAGAATGAAGTGATGGTGTCCTTGATCTCACAGTAGGCT
GNATTACCAGGAGGAACATGGGCATTGTCCCCAGACTCTTCAGTGCTCCT
TTCCTCCTCTTCCCAGCTAGCACTGCAATCTCCTGTAATCTTAGAATACA
CAATGGGAAGTCAGGCCTGGCTGGTCCTCCACTTTCTCTATTCTTCGGGC
CCCAGTCTCCCATCCTTCAGCATGTGCCAAGACATCTTGGGGCATGCAAT
CTGAAGCCACCTGCTCCAAGGTTTCCTCAGTTTCCTTGACTTACAACAAT
AATGAAATGTCACTGTGACCACGAGAAAGGATCCCCAACGACATATCCTG
GCCCTGCGAAGGCTGGGCAATCCCCGGCGGCACCAATGTCTTTTCAATCT
AAACACACCCCCTGCGTTTGAAATAACTTGGTCGAAAATCTTCTCAAATT
TATGTGTTTCTCATTGTTCAACTCCCTTGTTTCTCTG
NCCCCCAATGATACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATCAGGATTTGCAAGAC
CATCTGGAAATACTTCGAATACACTAATCTCTGTAAGGAACACAGTTACT
GTGAGGGGGGTGAACCCATGAGAACCTACCTATGGGAAGTCCTTGGAAGC
ACTAGTGTAATTTGTGATGGTTAGCCAGGTCCGCCTTCAGTAGCAGCAGC
CATTATAGTCTTGTCATATTTATGAGACAGTGCAGATATAAACAGGATAG
GCAGTGGTCAAATGTGGCCCCTCTGTCTTTCTTCTTTCTGGAACGGTGGC
TAAAACCTGAGCCAGTGACCATGGGAATGTGTAACACCCTGTGCCAGCAG
TAGTGGCCAGACAATCCTTAAAGTGGCTATAAATAAGACAGGATTAAGCA
TGGGAAAGGGCTGTGGGGCCCCTCCTACCAGAAAGTCTGGTGCCAACCTG
ATTCCCCCCGCCTGTCATCCTGCTGTGACCTTCACCCCCCTTCCTGCCGC
TGCGCCTTGCTGCTCTATCCCCCTGCCTAATTCGCTCGCCCCATTCCCGT
CCTTCCTTCCCCCCCCCTCCCTTTTCCTTTTTTTCTCTCTTTCCACTCCC
TTTTCCTCCTCCTTTCCTCCTTTTTCCTCTCTTTCTTCCCCTTCCTCCTT
CCTTTTTTTTCCCCCTTCCCCCCTTTTTTTTCTCATTCCCCCCCCCGTTT
CCTCTCCTCTGCGCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_p08.b1 MSMg01no475_p08.b1 CHROMAT_FILE:
MSMg01no475_p08.b1 PHD_FILE: MSMg01no475_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:54 2005
         (203 letters)



>mm_chr3_38978769_38979371
          Length = 603

 Score =  393 bits (203), Expect = e-114
 Identities = 203/203 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccaggaggaacatgggcattgtccccagactcttcagtgctcctttcctcctcttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccaggaggaacatgggcattgtccccagactcttcagtgctcctttcctcctcttccc 260

                                                                       
Query: 61  agctagcactgcaatctcctgtaatcttagaatacacaatgggaagtcaggcctggctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctagcactgcaatctcctgtaatcttagaatacacaatgggaagtcaggcctggctgg 320

                                                                       
Query: 121 tcctccactttctctattcttcgggccccagtctcccatccttcagcatgtgccaagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctccactttctctattcttcgggccccagtctcccatccttcagcatgtgccaagaca 380

                                  
Query: 181 tcttggggcatgcaatctgaagc 203
           |||||||||||||||||||||||
Sbjct: 381 tcttggggcatgcaatctgaagc 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no475_p08.g1 MSMg01no475_p08.g1 CHROMAT_FILE:
MSMg01no475_p08.g1 PHD_FILE: MSMg01no475_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:54 2005
         (293 letters)



>mm_chr3_39148264_39148956
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatcaggatttgcaagaccatctggaaatacttcgaatacactaatctctgtaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctatcaggatttgcaagaccatctggaaatacttcgaatacactaatctctgtaaggaa 434

                                                                       
Query: 61  cacagttactgtgaggggggtgaacccatgagaacctacctatgggaagtccttggaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cacagttactgtgaggggggtgaacccatgagaacctacctatgggaagtccttggaagc 374

                                                                       
Query: 121 actagtgtaatttgtgatggttagccaggtccgccttcagtagcagcagccattatagtc 180
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 373 actagtgtaatttgtgatgggcagccaggtccgccttcagtagcagcagccattatagtc 314

                                                                       
Query: 181 ttgtcatatttatgagacagtgcagatataaacaggataggcagtggtcaaatgtggccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgtcatatttatgagacagtgcagatataaacaggataggcagtggtcaaatgtggccc 254

                                                                
Query: 241 ctctgtctttcttctttctggaacggtggctaaaacctgagccagtgaccatg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctctgtctttcttctttctggaacggtggctaaaacctgagccagtgaccatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)