Query= MSMg01no477_k20.b1 MSMg01no477_k20.b1 CHROMAT_FILE:
MSMg01no477_k20.b1 PHD_FILE: MSMg01no477_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:11 2005
(374 letters)
>mm_chr3_4949186_4949959
Length = 774
Score = 675 bits (349), Expect = 0.0
Identities = 366/373 (98%), Gaps = 4/373 (1%)
Strand = Plus / Minus
Query: 1 tgtcctggaggccatacaataaatagattcacaaaagagtttaaaatatatgagtcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgtcctggaggccatacaataaatagattcacaaaagagtttaaaatatatgagtcagtt 311
Query: 61 ctaagtatcacaaaaagaaatatgaagaatgtgataagtttacacatgatatagtgtgca 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctaagtatcacaaaaagaaatacgaagaatgtgataagtttacacatgatatagtgtgca 251
Query: 121 aggggagcaaagacttgacttttggaaatatgctgacattaaatgtttcagg-attgaag 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 250 aggggagcaaagacttgacttttggaaatatgctgacattaaatgtttcaggtgttgaag 191
Query: 180 cgtccacattttagtatttcttcttgttaagtttaatagggtatgtgagttgtattgtgg 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 catccacattttagtatttcttcttgttaagtttaatagggtatgtgagttgtattgtgg 131
Query: 240 gttattctgagcttttgggctaatacccacttatcaatgagtacataccatgtgtgtcct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gttattctgagcttttgggctaatacccacttatcaatgagtacataccatgtgtgtcct 71
Query: 300 tttgtgtctgggttatctcactcgggatgatattttctacctccattcatttgcatgcaa 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 70 tttgtgtctgggttatctcactcgg---gatattttctacctccattcatttgcatgcaa 14
Query: 360 ttttcattgagtc 372
|||||||||||||
Sbjct: 13 ttttcattgagtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_k20.g1 MSMg01no477_k20.g1 CHROMAT_FILE:
MSMg01no477_k20.g1 PHD_FILE: MSMg01no477_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:11 2005
(659 letters)
>mm_chr3_4759579_4760637
Length = 1059
Score = 1228 bits (635), Expect = 0.0
Identities = 653/659 (99%)
Strand = Plus / Plus
Query: 1 cataatttgttcaataaaattaataaaagaaacagaagtaaagacaaaaacaatgacaat 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cataatttgttcaataaaattaataaaagaaacagaagtagagacaaaaacaatgacaat 260
Query: 61 ggcaaataataataaaaataatgctgttttatcaaaggcagcatgggttgttgagagatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaataataataaaaataatgctgttttatcaaaggcagcatgggttgttgagagatt 320
Query: 121 tcccagctatactgactgtgacgagacatagtgtggcatgacacataggtggaattttat 180
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttccagctatactgactgtgacgagacatagtgtggcatgactgataggtggaattttat 380
Query: 181 tatttatgctaattatgagaagcaagtttctgtcacatagactcttttctacctttctgt 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tatttatgctaattatgagaagcaagtttctgtcacatagactctttcctacctttctgt 440
Query: 241 ttacttttatgttgcacctgttttaaatccacttattgtcttgtctgttatattctgata 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactttcatgttgcacctgttttaaatccacttattgtcttgtctgttatattctgata 500
Query: 301 tttaattgctgtaattaaattataaagagtgaatacaagcaataaaacagacctagtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaattgctgtaattaaattataaagagtgaatacaagcaataaaacagacctagtttt 560
Query: 361 ctacttgattctatagatatttagcaaacataatatacaaattaagtaaaagcaaggcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacttgattctatagatatttagcaaacataatatacaaattaagtaaaagcaaggcat 620
Query: 421 atcatggaccttagtggagagcatgctctttctctaagcattgtataaataattgaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcatggaccttagtggagagcatgctctttctctaagcattgtataaataattgaaaaa 680
Query: 481 ctttaagacagataatatatgccttaacacatatattaacatttgtttccattattgttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttaagacagataatatatgccttaacacatatattaacatttgtttccattattgttt 740
Query: 541 caggtgttgcacttataggaaaatatttgagtctgccataaaattgaactaatatagatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggtgttgcacttataggaaaatatttgagtctgccataaaattgaactaatatagatg 800
Query: 601 cctctgatctttctcctgaaaaggaagtgagtacagctggtcccaagatcctgggacaa 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctctgatctttctcctgaaaaggaagtgagtacagctggtcccaagatcctgggacaa 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
