Query= MSMg01no477_m19.b1 MSMg01no477_m19.b1 CHROMAT_FILE:
MSMg01no477_m19.b1 PHD_FILE: MSMg01no477_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:20 2005
(605 letters)
>mm_chr3_117331547_117332550
Length = 1004
Score = 1147 bits (593), Expect = 0.0
Identities = 599/601 (99%), Gaps = 1/601 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaattccttgcgtttatgctaagccacacagtgaagcatcaaacaaatattcct 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaattcaaattccttg-gtttatgctaagccacacagtgaagcatcaaacaaatattcct 746
Query: 65 tagttcattttcaaatactggcatcactttattcatatgcgttcacatatgacctaacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagttcattttcaaatactggcatcactttattcatatgcgttcacatatgacctaacat 686
Query: 125 taagaaaacaaatctctacaccagatcatgagatgattttcataaagaatactgctcaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taagaaaacaaatctctacaccagatcatgagatgattttcataaagaatactgctcaga 626
Query: 185 aggccattctttcctaaatacctacctgttaaacttctggcaatcgttctatggggccaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggccattctttcctaaatacctacctgttaaacttctggcaatcgttctatggggccaa 566
Query: 245 attattttgaaacagccagcttttttattatgaaattttcccaaggtgtcactagtgaat 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attattttgaaacacccagcttttttattatgaaattttcccaaggtgtcactagtgaat 506
Query: 305 ctggggcaaaatacattcgtatataagttcaaatataatggcaaaccctgactggaaatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggggcaaaatacattcgtatataagttcaaatataatggcaaaccctgactggaaatc 446
Query: 365 ctgtgtttgcagcaggagttatattcagagttgccatagcagccacccacattctctctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgtttgcagcaggagttatattcagagttgccatagcagccacccacattctctctc 386
Query: 425 acacacacaaaggggcggtgaggaaagaggagaaagcagttagcagagaacagaatctat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacacacaaaggggcggtgaggaaagaggagaaagcagttagcagagaacagaatctat 326
Query: 485 tgttgaaaagacagaggtgcctatcatcgtaattacaagcagggatcctaactctgtctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttgaaaagacagaggtgcctatcatcgtaattacaagcagggatcctaactctgtctg 266
Query: 545 aacagtatttaatgatagaagatgtcttagcacaggactgctctctaatctccttaccct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacagtatttaatgatagaagatgtcttagcacaggactgctctctaatctccttaccct 206
Query: 605 g 605
|
Sbjct: 205 g 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1004
Length adjustment: 10
Effective length of query: 595
Effective length of database: 994
Effective search space: 591430
Effective search space used: 591430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_m19.g1 MSMg01no477_m19.g1 CHROMAT_FILE:
MSMg01no477_m19.g1 PHD_FILE: MSMg01no477_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:21 2005
(620 letters)
>mm_chr3_117096247_117097267
Length = 1021
Score = 1004 bits (519), Expect = 0.0
Identities = 580/621 (93%), Gaps = 35/621 (5%)
Strand = Plus / Plus
Query: 1 aacactaaccagaaaagaatggtttggcaaagagagctacttggggaagattaagcccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aacactaaccagaaaagaatggtttggcaaagagagctacttggggaagataaagcccaa 260
Query: 61 gggagaaaaccggg-agggggaagcaaacatttgtttgcaagaattacaacaatggattt 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagaaaaccgggaagggggaagcaaacatttgtttgcaagaattacaacaatggattt 320
Query: 120 agtcaaaataaaaatccatcttttataaatgtgtggttaaaaaaatgatgtgtttatagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaaaataaaaatccatcttttataaatgtgtggttaaaaaaatgatgtgtttatagt 380
Query: 180 ctagtgcctggtatgtgggtaaaatagacctgataggtctatttaatagctagatgggta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagtgcctggtatgtgggtaaaatagacctgataggtctatttaatagctagatgggta 440
Query: 240 cattaatacatatctttgcttacttgaggactgccaacaccattccaaagtaaactagag 299
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgttgatacaaatctttgcttacttgaggactgccaacaccattccaaagtaaactagag 500
Query: 300 tccagacttaagcttaaggaaaataaaatggatattataaagctagagttttggagactg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccagacttaagcttaaggaaaataaaatggatattataaagctagagttttggagactg 560
Query: 360 ttcacttaaatgaacatatatatatatatatatatatatatatatatatatttatattgt 419
||||||||||||| | ||||||||||||||||||||
Sbjct: 561 ttcacttaaatga---t-----------------------tatatatatatttatattgt 594
Query: 420 ctgtctggaatatattctcacgggtttatgggttgctatctacaattaaacaattaaact 479
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 595 ctgtctggaatatattctcacaggtttatgggttgctatctacaattaaac--------t 646
Query: 480 gtctattttctttttctgaaggagacataatatggaaattctaacaatttgcccaaggac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gtctattttctttttctgaaggagacataatatggaaattctaacaatttgcccaaggac 706
Query: 540 aagcagataggatatcatgtcttttataatccaaacttcatgctcaaaatgacacatttg 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aagcagataggatatcatgtcctttataatccaaacttcatgctcaaaatgacacatttg 766
Query: 600 ctggttggtttgttattttaa 620
|||||||||||||||||||||
Sbjct: 767 ctggttggtttgttattttaa 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space: 616710
Effective search space used: 616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
