XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
GATTTCCTTTTGGAAATGGGTGGAACTAGAAAATATCATCCCGAGTGAGG
CAACCCAGTCACAAATGCACATACATGGTATGTGCTCACTGATATGTGGA
TATTATCCTTAACCCAGCGAATACCCAAGATAATATTCGCAGAACATATG
AAGCTCAAGAAGAAGGATAACCAAAGTTTGCCTGCTTCATTCATTCTTAG
AAGGTAGAACAAAATGCTCATTTGAGGTAGAGTATGGATGGACTTGGGAT
GAAGACATGACTTGGAGGGGAAAGGGGGACAGGATCAGATATGGGAGAAG
ACTGGAAAGATATACAGTTGGTCAGGAATCAGAACACAGGTGTGTAGGAA
TGGGGAATGGGGAATGGGGAACTGGATGTAGCTACCAGCAAGTCCCAGAT
GCCAGGAAAGCAAGAGACTTCCAGAACACAAAAAAAAGATGAGATTGGCT
GAAATACCCAACAAAGGTGAGGGAGAACAGGTAGAGACCATATCCAGAGG
TTAGGGAGGTCCCTGATTGGGGGATGCAGCCACCCAATCATCTCAAAATT
TTTAACTCAGAATTGATCCAAATACTCTGATCAGTATTTCCCAAAGGAAA
TATTGGGACAAAGTGTGGAGCAGAGACTGAAGGAAAATTTATCCAGTGAC
TGCCCTATTTGGGGATCCATCCCATATACAGAC

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTAGTATCTGAGAATGGACTTGGCAATTGCCAA
ATCAGCCAGGAGGTGCTGTTTCTATTCGGGCTGAGTAATGTTTGTTTCCT
ACTGTTTTCAAATAACACCTGTGCTACTCATGACTATTTCCTTCTGGATT
TTTAAATTAGTGTTGTGGGTTAGTTGTTTAATTTTGATTTTAGGAAACTA
TTTTTGGAGATAGGATGGAACATACTTATCCACTAGTGGGTGTCTGATGA
GGATATAAGAGTTCATTTTAACCCAGAGATTAATAAACAAAAAAAAAAAT
GGGAGGGCTTAATTTTGGCTCATAGTTTTGGAAAGTACAGTTTGTGGTTT
CTTGGCCCCCATCTCCTTGGGTAGAAACATTCTGACATGGAAACAGAATC
ATCAGAAGTGAAAGCAGCAGTAGTTCTAGCTTTTATCAACCCGGCAGCAC
CAGATATTAAAACCAAACTCCAAAGCATTGAGAGTGCAGAGGAGAAGCAG
ATGAGGGCAGAAAAAGTTAGAGTAAAGAGAAATTAAAGAGAAGAAGCACA
CAGGAACCAAGGAGCAGCCTGAGACAGGATTTTTCTGGATTCTATCCGTG
CCCAGAGATGAGCCTGTACTTCAGCTCTCTATACCCAAATTCCACCAGAA
AGAGCTGGTCCTCTAAGAGTGCTGACATACTTGN

Query= MSMg01no478_h08.g1 MSMg01no478_h08.g1 CHROMAT_FILE:
MSMg01no478_h08.g1 PHD_FILE: MSMg01no478_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:11 2005
         (668 letters)



>mm_chr3_3180556_3181623
          Length = 1068

 Score =  518 bits (268), Expect = e-151
 Identities = 407/458 (88%), Gaps = 14/458 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagtatctgagaatggacttggcaattgccaaatcagccaggaggtgctgtttctatt 60
           |||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 201 agtagtttctgagaatgtacttggcaattgccaagtcagacaggaggtgctgtttctatt 260

                                                                       
Query: 61  cgggctgagtaatgtttgtttcctactgttttcaaataacacctgtgctactcatgacta 120
           ||| |||||||||||||||||  ||||||| ||||||||||||| |||||||||||||||
Sbjct: 261 cggtctgagtaatgtttgttttgtactgttgtcaaataacacctttgctactcatgacta 320

                                                                       
Query: 121 tttccttctgga-tttttaaattagtgttgtgggttagttgtttaattttgattttagga 179
           |||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 321 tttcattctggaatttttaaattagttttgtgggttagttgtttaatattgattttagga 380

                                                                       
Query: 180 aactatttttggagataggatggaacatacttatccactagtgggtgtctgatgaggata 239
           |||||||||||||||||||| ||| || | ||||||||||||||||||| ||||||||||
Sbjct: 381 aactatttttggagataggaaggaccaaaattatccactagtgggtgtcagatgaggata 440

                                                                       
Query: 240 taagagttcattttaaccca--gagattaataaacaaaaaaaaaaat---gggagggctt 294
           |||||| |||||| |||  |  || |||| ||||||||||||    |   ||||||||||
Sbjct: 441 taagagctcatttgaac--aatgaaattattaaacaaaaaaa----tcttgggagggctt 494

                                                                       
Query: 295 aattttggctcatagttttggaaagtacagtttgtggtttcttggcccccatctccttgg 354
           |||||||||||||||||||||||| ||||| ||  |||||||||||||||| || |||||
Sbjct: 495 aattttggctcatagttttggaaattacagcttaaggtttcttggcccccacctgcttgg 554

                                                                       
Query: 355 gtagaaacattctgacatggaaacagaatcatcagaagtgaaagcagcagtagttctagc 414
           ||| |||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||
Sbjct: 555 gtaaaaacattctgacatggaaccagaatcacccgaagtgaaagcagcagtagctctagc 614

                                                 
Query: 415 ttttatcaaccc-ggcagcaccagatattaaaaccaaa 451
           |||||||| ||| || || |  ||||||||||| ||||
Sbjct: 615 ttttatca-cccaggtaggaggagatattaaaagcaaa 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)