BAC Information

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BAC

Clone NameMSMg01-478H11
Chromosome3 (Build37)
Map Location 158,798,248 - 158,798,633
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc7, LOC100041008, LOC668905
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478H11.T7 (MSMg01no478_h11.b1)MSMg01-478H11.TJ (MSMg01no478_h11.g1)
ACCAG559576AG559577
length736779
length of high quality
(start - end)
386 (314 - 699)39 (64 - 102)
definitionCHROMAT_FILE: MSMg01no478_h11.b1 PHD_FILE: MSMg01no478_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:12 2005CHROMAT_FILE: MSMg01no478_h11.g1 PHD_FILE: MSMg01no478_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCAATACGACTCACATTTCATAGAGGAGCCGNGGAATTCTTATT
TTCAAAAGATGGCTAGGAGATAGCTATATTTATCTCTTACTTGAGTTTTC
CCCCATGACCATCTCATTCCAGAATTTCTGCCACTCACTAGGCAAACAGA
AAACATATACAATGTAAGTACAACTACAAAGAAGCCTTATCTCAGCAAAG
CCCACTAAACATTACAGATCCTTGACTTCCCTTTTTATGCTTTTCCCAGT
GTGGCAAAATTCCATTTTGCTCTAGAGTATTCCTAGGTAGTATTTTTATT
ACATTGATCNTTATAGATGGAAGATGAACCAAAAGAAATGTAACACTGTG
TGAGGTAAGTGAGGGAGAACCAAAGCCTGCCTCTTCCCTGCAGAATTGCT
CTCATCATGTCTTAGAGTACAAACAGTTGAAATGGGCCAATCAGCAGCCT
TTTCATTTTCTTCTGACTAAAATGTCATGCATCTAATCACATTAATTGGA
GTCATTCTGCACTTACTCCTCGTGTTCTCAAACCCCATCTCTCTACTTGA
TGTTCTGTCTTTCTACTGGAGGTGGACTTTACAAATTCCTTCTACCCACT
GTAGGGCATTTCATCTAAGGTCCCCCACTTTGAGACCTGAGAGTCTCTCA
TTTCCCATGTCACTGGTACTTTCTAGAGGGTCCCCATACCTCATACCTTC
CAAGGTTCATGTCCATTCTTTCTGCTTGCCCTCAAG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TACATGCAGGGGTCTAGTGGGGTGAGTGTGTGTGTGTGTGTGGGGGGGTN
GGTTTTCCCTACATATATATATATATATATATGTACATATATATGATTTA
TTATTATGGCGGGATGGGTTATGCTTGGTGATAGGCCAGTATCCTACCCA
GCACCCTGCAGTTTGAAAAAGCATGCTCTCCGGCTTTTTTTTTTTCACTC
CCAAACGCCCCAGCAACCCGAAACCTCTCCGCCCACAAGCCCTGAGACAT
GTTTAATGAATTTCACACAGAGCCCGACCAAAAGCCACCCGGCCATTTTT
CCCCCCCCCACATATATAGAAGGCAGGACTTAAGCTTATTATATCGAAAT
GTTCCCCCCCCCTCTTTTTATTACTACCAATCGCTCCCCGACCCCAGAAA
CATACGCCCTACACCCCCCAATGTCCTTAACACGCAGCCTAGCTCCTACA
CATCCCCATCACTTCCTCCTCAACTCCCCCCCCATCCCCTTATCACCCCC
CCACATTTATTACCCCCTCCGTATTTATCCCATCCTCGCAGACTTTTTTC
CTGTCTTTCTTTTCAACTCGACCAACACCCCCACTTCTAAAGAAGGAGCC
ACGACCTTTCTTTTTTTCTTCTTTATCACACAACTACCCTATTCTCTTTT
GTGTCACACCCTCCCCGTCCTCCTAAGCCACCCTGCTCCTTCCCGCTCCT
TCTACTTATTCCACCCCCCTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_h11.b1 MSMg01no478_h11.b1 CHROMAT_FILE:
MSMg01no478_h11.b1 PHD_FILE: MSMg01no478_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:12 2005
         (386 letters)



>mm_chr3_158798048_158798833
          Length = 786

 Score =  731 bits (378), Expect = 0.0
 Identities = 384/386 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatggaagatgaaccaaaagaaatgtaacactgtgtgaggtaagtgagggagaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 201 tagatggaagatgaaccaaaagaaatgtaacactgtgtgaggtaattgagggagagccaa 260

                                                                       
Query: 61  agcctgcctcttccctgcagaattgctctcatcatgtcttagagtacaaacagttgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctgcctcttccctgcagaattgctctcatcatgtcttagagtacaaacagttgaaat 320

                                                                       
Query: 121 gggccaatcagcagccttttcattttcttctgactaaaatgtcatgcatctaatcacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggccaatcagcagccttttcattttcttctgactaaaatgtcatgcatctaatcacatt 380

                                                                       
Query: 181 aattggagtcattctgcacttactcctcgtgttctcaaaccccatctctctacttgatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattggagtcattctgcacttactcctcgtgttctcaaaccccatctctctacttgatgt 440

                                                                       
Query: 241 tctgtctttctactggaggtggactttacaaattccttctacccactgtagggcatttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtctttctactggaggtggactttacaaattccttctacccactgtagggcatttca 500

                                                                       
Query: 301 tctaaggtcccccactttgagacctgagagtctctcatttcccatgtcactggtactttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaaggtcccccactttgagacctgagagtctctcatttcccatgtcactggtactttc 560

                                     
Query: 361 tagagggtccccatacctcatacctt 386
           ||||||||||||||||||||||||||
Sbjct: 561 tagagggtccccatacctcatacctt 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)