Query= MSMg01no478_p02.b1 MSMg01no478_p02.b1 CHROMAT_FILE:
MSMg01no478_p02.b1 PHD_FILE: MSMg01no478_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:46 2005
(685 letters)
>mm_chr3_5516926_5518010
Length = 1085
Score = 884 bits (457), Expect = 0.0
Identities = 478/487 (98%), Gaps = 6/487 (1%)
Strand = Plus / Minus
Query: 1 actgccttttataaatcagttagcactagttactagaaggaagttacagaagttagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 actgccttttataaatcagttagcactagttactagaaggaagttacagaagttagaaag 427
Query: 61 actaggggagaagtcattgagggatttggtggaggttttggagaaagtgtatcataacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 actaggggagaagtcattgagggatttggtggaggttttggagaaagtgtatcataacag 367
Query: 121 gggaactaaagatgaaaagaagattaagacaggaaagatattaaacagagatctagccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gggaactaaagatgaaaagaagattaagacaggaaagatattaaacagagatctagccac 307
Query: 181 ggtcctgttagccaatggtagcccggaccagagagaaaggaaacaccagctct-ggaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 306 ggtcctgttagccaatggtagcccggaccagagagaaaggaaacaccagct-tgggaaca 248
Query: 240 ttgtagaggggagagatcctggagaaggctgccgaccagctttaggtaagaaccatgtgt 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 247 ttgtagaggggagagatcctggagaaggcggccgaccagctttaggtaagaaccatgtgt 188
Query: 300 ctatggtaagacatatgacattgggccagagaaagcctatggagaaagtccaaaaataag 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctattgtaagacatatgacattgggccagagaaagcctatggagaaagtccaaaaataag 128
Query: 360 attatgatcaccaaggaagatgaagactgggggtgtcagggtgcggaccccgtcccagag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 attatgatcaccaaggaagatgaagactgggggtgtcagggtgcggaccccgtcccagag 68
Query: 420 cccatggtaacccttagtgtgtgtgtgtg----gggggggcctctagatttcctggtggg 475
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 67 cccatggtaacccttagtgtgtgtgtgtgtgtggggggggcctctagatttcctggtgga 8
Query: 476 tactgga 482
|||||||
Sbjct: 7 tactgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_p02.g1 MSMg01no478_p02.g1 CHROMAT_FILE:
MSMg01no478_p02.g1 PHD_FILE: MSMg01no478_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:46 2005
(675 letters)
>mm_chr3_5337078_5338152
Length = 1075
Score = 1251 bits (647), Expect = 0.0
Identities = 672/689 (97%), Gaps = 14/689 (2%)
Strand = Plus / Plus
Query: 1 aggacaatgtttacatgatggagtacagctcaaggcacaagatttattggcagtcaccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacaatgtttacatgatggagtacagctcaaggcacaagatttattggcagtcaccag 260
Query: 61 tcatagcacgattgcttgtaatttaatggaaaaatccaatgaccaatatatttattttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatagcacgattgcttgtaatttaatggaaaaatccaatgaccaatatatttattttgc 320
Query: 121 cataaatcaagtgtattaacttagggttataagtatctttcgtgtttttaattcagcaaa 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataaatcaaatgtattaacttagggttataagtatctttcgtgtttttaattcagcaaa 380
Query: 181 aattaaatgactttttattggcatgccattgtgtagagtccaatcccaaaactgtctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattaaatgactttttattggcatgccattgtgtagagtccaatcccaaaactgtctttg 440
Query: 241 aatttcagtttacatttcatatacagcttaaagttggtgaatgtatgactataaacaagt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 aatttcagtttacatttcatatacagcttaaagttggtgaatgtatgactataatcaagt 500
Query: 301 gtcataagatgaactagaaacaaggtgatggagccctatacaaagtgacttatattaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcataagatgaactagaaacaaggtgatggagccctatacaaagtgacttatattaaat 560
Query: 361 ctgatgcaaaatagagcacagcaggatataagaacttgaagtgtgggcaagatttcagca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ctgatgcaaaatagagcacagcaggatataagaacttgaagtgtgggcaagatttcggca 620
Query: 421 ttgagagaaggatgtgaggtcgtgagcctccaatgttaagattggtaagcaaaggctttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgagagaaggatgtgaggtcgtgagcctccaatgttaagattggtaagcaaaggctttg 680
Query: 481 agtttgaaaacctctgggtacgctgcaaagggaaggagtacagtttaactaaaacattgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtttgaaaacctctgggtacgctgcaaagggaaggagtacagtttaactaaaacattgg 740
Query: 541 gtgtgtgaatagaaagtatgaagtaggcccaggaaaaggccattaattgttaacaatgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtgtgaatagaaagtatgaagtaggcccaggaaaaggccattaattgttaacaatgat 800
Query: 601 gatgattttgcta--------------aatatggtgtgttgatggcaatgttttaagtac 646
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 gatgattttgctagtagacctttcctaaatatggtgtgttgatggcaatgttttaagtac 860
Query: 647 actatacatatatactttagtattatcag 675
|||||||||||||||||||||||||||||
Sbjct: 861 actatacatatatactttagtattatcag 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
