CGGGGAGGGCCGAAAAAAAAAAATTTTTGGGGGGCCGGGGGGCCCCGGGG
GCCCCCTTTAAAAAAAAAATAAAAAGCGGGGGGGGGGAAAAAAAAACAAC
CGCCTGTTTGGTGCCCCCCCCACAAAAAAAAAACCCCCCCGGCGGGGGGG
AGGAGAAAAAAAAATATTTTTTTCTTCTCCACACCCACCCCCCCCCGGGG
GGGGGGGGGNGGNNGGGGGGGGNNNNNNTTTNNTNNCCNCAAAAAAAAGA
AGGCNATCCGGCGGGNAAANNTCTTNAGTAAACCGATCTNTNTNTNTAAA
GGGGGGGAATTTTTTAAAAAAATTTTAAAGGGGGGAAAATTTTTTTTTTG
TCCGCTCTCCCCCCCAAAAAAAAAAAAAAGGTTGGGGGAAAATCCCGTAA
TCCGCTCAANTAATCTTAAGGGGATGGTGGAACTTTTAAATTTGGGGAGG
GAAAAAGAGGTTTTTTTAAAAAAAGTGGGGAAAAATTTTAAAAAAATTTT
TAAAAGGGGGGGGGGGGGGAAGGGGGGGGGGGGGCCAGGGGGGCCAAAAA
AAACCCCCCGCGGGGTGGGGGGNGGGGGGGGGGCNTAGAAAAAAAAAAGA
GAAAAGGGGGGGGGGGGGGGTGGTTTTTTCTTTTCGAAAAGGGAAAAAAA
AAAAAAAAAGTTTTGTGGGGTGGGGGGGGGNGGGGGGGGNCACAAACGNG
CCGAACAGAGACGGGGGNAGGGGGNGGNNNNCCCGGGGGGGGGCCCCCCC
CCCCCACAAAGAGGGGGGGGGGGGGGGGGGGTTTTAAAAAAAAAAAAAAA
AA

CAAGGACCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGTGCATTTTTATG
CATTTGTGAGTGTCTTCCATTTTCCTTCTCCAATTTGCTTTATAAAAATA
GACCCCCTTCCTTGAGCTAAGGGTGGGAAAAAAAATCCTTGCACAAAATA
ATCTGATGTGTTTATATTTGAGTTTCTAAATATAATTCATACTATGTTCA
TCTATCATGGGCTCATTTATCATTTATTCTTTGTAGTGTGGTTACAATTA
CAACATTCTGGAAGAAAGGCAGCTTTTCTGACTCCTAAATGCCCCTGGGT
CTTTCATGGCTCGCTGAGCAGTTATAAATGAAATACATTTAACTCAATGG
GTTGGAGATTCCCGCAATGCAATTTCAGTTTACAGGTAAAGCTGGTTATC
ACTACAAGCTGATAAACTGTGCTGGCAGAGTCATTTACAAGGAACTGCTT
CTATTTTTCGGCGCTCTTTATATTGACTCATAATTCCATAATACGGTTTG
TAATTTACGTTTCTCATATTACAAGGATGGCTGTGACTTCACCCTTTCCT
AACTCCTGGGACTCAAGTGACAGCAAGTTTTGTTTTGAAACATGGAGGGG
GTATTGTCCCTTCTGTTGTTGCCATATAACTGACCCACTGCATATTCACT
GAGAGTGGACCTAAGTGCCCTGCATCGG

Query= MSMg01no479_a03.g1 MSMg01no479_a03.g1 CHROMAT_FILE:
MSMg01no479_a03.g1 PHD_FILE: MSMg01no479_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:51 2005
         (615 letters)



>mm_chr3_120339959_120340971
          Length = 1013

 Score = 1154 bits (597), Expect = 0.0
 Identities = 610/615 (99%), Gaps = 2/615 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgtgcatttttatgcatttgtgagtgtcttccattttccttctccaatttgctttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgtgcatttttatgcatttgtgagtgtcttccattttccttctccaatttgctttata 260

                                                                       
Query: 61  aaaatagacccccttccttgagctaagggtgggaaaaaaaatccttgcacaaaataatct 120
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 261 aaaatagacccccttccttgagctaagggtgggaaaaaa--tccttgcacaaaataatct 318

                                                                       
Query: 121 gatgtgtttatatttgagtttctaaatataattcatactatgttcatctatcatgggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gatgtgtttatatttgagtttctaaatataattcatactatgttcatctatcatgggctc 378

                                                                       
Query: 181 atttatcatttattctttgtagtgtggttacaattacaacattctggaagaaaggcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atttatcatttattctttgtagtgtggttacaattacaacattctggaagaaaggcagct 438

                                                                       
Query: 241 tttctgactcctaaatgcccctgggtctttcatggctcgctgagcagttataaatgaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttctgactcctaaatgcccctgggtctttcatggctcgctgagcagttataaatgaaat 498

                                                                       
Query: 301 acatttaactcaatgggttggagattcccgcaatgcaatttcagtttacaggtaaagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acatttaactcaatgggttggagattcccgcaatgcaatttcagtttacaggtaaagctg 558

                                                                       
Query: 361 gttatcactacaagctgataaactgtgctggcagagtcatttacaaggaactgcttctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttatcactacaagctgataaactgtgctggcagagtcatttacaaggaactgcttctat 618

                                                                       
Query: 421 ttttcggcgctctttatattgactcataattccataatacggtttgtaatttacgtttct 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttcggcgctctttatattaactcataattccataatacggtttgtaatttacgtttct 678

                                                                       
Query: 481 catattacaaggatggctgtgacttcaccctttcctaactcctgggactcaagtgacagc 540
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 679 catattacaaggatggctgtgacttcaccctttcctcactcctgggactcaagtaacagc 738

                                                                       
Query: 541 aagttttgttttgaaacatggagggggtattgtcccttctgttgttgccatataactgac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aagttttgttttgaaacatggagggggtattgtcccttctgttgttgccatataactgac 798

                          
Query: 601 ccactgcatattcac 615
           |||||||||||||||
Sbjct: 799 ccactgcatattcac 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1013
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1003
Effective search space:   606815
Effective search space used:   606815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)