BAC Information

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BAC

Clone NameMSMg01-479C23
Chromosome3 (Build37)
Map Location 108,745,326 - 108,745,940
singlet/doubletsinglet
Overlap gene4921515J06Rik
Upstream geneGstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b
Downstream geneB430201A12Rik, 4930443G12Rik, Slc25a24, Vav3, Ntng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479C23.T7 (MSMg01no479_c23.b1)MSMg01-479C23.TJ (MSMg01no479_c23.g1)
ACCAG560125AG560126
length815809
length of high quality
(start - end)		624 (68 - 691)569 (73 - 641)
definitionCHROMAT_FILE: MSMg01no479_c23.b1 PHD_FILE: MSMg01no479_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:05 2005CHROMAT_FILE: MSMg01no479_c23.g1 PHD_FILE: MSMg01no479_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGCTAAATTCGCCCATGCAGTCCAAAGACTGGGATCCAGACTCAGA
GCAAAGCCTGCTAGAGAAGAGACCTCAGTAGTTTGAGTGAAGCCTGGGAG
GTTAAGAGAGTTGGTTGAGAGAGTCTTCGGTCTGTCTAGACCACCGTCCT
TGGCAGTTTGCAAAGTAAAGAGGTCCCTGATGTTTACCTACAGGCAGCAG
AAACACCCACTTAGTGCATACTTCTCAGCAGCCTTAAGTCTGAGCTGCTG
CTACCCAGATTGATCCTTTTGTTTTCTTCTTATGTCTAAAGTCACGTGTG
ATTGAGACCTTTGTATTGTTGTTTAAAATCTTGCAGTGCAATAGTGTGGT
TGGTGGCAATTTTAAAGAAGTTTGTCCAGAGAAGGTAATTCGGTTCAAAC
CACCATTATACAAACAACGGTATCAGTTTGTTAGAGAGTTAGTGGATCGC
CATGAACCCAAGAAGGTAATTATTATTATTATTATTATTATTATTATTAT
TATTATTATCTGTTAAGACTGCCCCTATTAAAGTGGTTTATCAAATATAC
TGTAAGATACCTGCCCCCTCACCTCTCACCCAAGTATTTGGGATTTCAAA
CAAGGGCTCTGGTGTGCTAGGCGAGCTGACTAGTGACTTTCCCAGCCTGA
TTGATTTAGGGTGTTGGATATGATTATAGTACCCTGTATACAAATAGAAA
ACTGTCNGAAAGAAAGAAAAGACATGTGGNTTTTGTAGTTGCCTAGTCTG
ACCTCTACCTTATAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACGC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACCATTTTCCTT
AACACTTGTAACTCAAGAAAATGAAGACCTGAGTGTGGACACTATGCCCC
TCCTTAAAAGTGGGAACAACACCCCTGGGAGGAGTTCAGAGACAAAGTTG
GAGCTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_c23.b1 MSMg01no479_c23.b1 CHROMAT_FILE:
MSMg01no479_c23.b1 PHD_FILE: MSMg01no479_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:05 2005
         (624 letters)



>mm_chr3_108745126_108746149
          Length = 1024

 Score = 1114 bits (576), Expect = 0.0
 Identities = 608/624 (97%), Gaps = 9/624 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcagtccaaagactgggatccagactcagagcaaagcctgctagagaagagacctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcagtccaaagactgggatccagactcagagcaaagcctgctagagaagagacctca 260

                                                                       
Query: 61  gtagtttgagtgaagcctgggaggttaagagagttggttgagagagtcttcggtctgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtttgagtgaagcctgggaggttaagagagttggttgagagagtcttcggtctgtct 320

                                                                       
Query: 121 agaccaccgtccttggcagtttgcaaagtaaagaggtccctgatgtttacctacaggcag 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaccaccgtccttggcagtttacaaagtaaagaggtccctgatgtttacctacaggcag 380

                                                                       
Query: 181 cagaaacacccacttagtgcatacttctcagcagccttaagtctgagctgctgctaccca 240
           ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaaacgcccacttagtgaatactgctcagcagccttaagtctgagctgctgctaccca 440

                                                                       
Query: 241 gattgatccttttgttttcttcttatgtctaaagtcacgtgtgattgagacctttgtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattgatccttttgttttcttcttatgtctaaagtcacgtgtgattgagacctttgtatt 500

                                                                       
Query: 301 gttgtttaaaatcttgcagtgcaatagtgtggttggtggcaattttaaagaagtttgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 gttgtttaaaatcttgcagtgcaatagtgtggttggtggcaattttaaagaagttagtcc 560

                                                                       
Query: 361 agagaaggtaattcggttcaaaccaccattatacaaacaacggtatcagtttgttagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagaaggtaattcggttcaaaccaccattatacaaacaacggtatcagtttgttagaga 620

                                                                       
Query: 421 gttagtggatcgccatgaacccaagaaggtaattattattattattattattattattat 480
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tttagtggatcgccatgaacccaagaaggtaattattattattattattgttattattat 680

                                                                       
Query: 481 tattattattatctgttaagactgcccctattaaagtggtttatcaaatatactgtaaga 540
           |||         ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tat---------ctgttaagactgcccctattaaagtggtttatcaaatatactgtaaga 731

                                                                       
Query: 541 tacctgccccctcacctctcacccaagtatttgggatttcaaacaagggctctggtgtgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tacctgccccctcacctctcacccaagtatttgggatttcaaacaagggctctggtgtgc 791

                                   
Query: 601 taggcgagctgactagtgactttc 624
           ||||||||||||||||||||||||
Sbjct: 792 taggcgagctgactagtgactttc 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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