Query= MSMg01no479_k01.b1 MSMg01no479_k01.b1 CHROMAT_FILE:
MSMg01no479_k01.b1 PHD_FILE: MSMg01no479_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:42 2005
(667 letters)
>mm_chr3_77117888_77118954
Length = 1067
Score = 1023 bits (529), Expect = 0.0
Identities = 577/599 (96%), Gaps = 13/599 (2%)
Strand = Plus / Minus
Query: 1 agtgcttgtaactgtcatggcacagaaggtcaagccatgctttgcttgctgtgtacatgc 60
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 599 agtgcttgtaactgtcatggcgcagaaggtcaagccatgctttgattgctgtgtacatgc 540
Query: 61 accccttcagcatggcaggatggcgagtccttcaaatgactgatcttaaagcacctggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 accccttcagcatggcaggatggcgagtccttcaaatgactgatcttaaagcacctggta 480
Query: 121 agtaattgcataggctttgagtaggtctgtcgtgtggcaaccagagagagcaaatgtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 479 agtaattgcataggctttgagtaggtctgtcgtgtggcaaccagagagagcaaatgtctg 420
Query: 181 atgttggaacctgccttaaactccacccatcctgttgtggccgaaggatctacagggccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atgttggaacctgccttaaactccacccatcctgttgtggccgaaggatctacagggccc 360
Query: 241 tgtttatgacctacagtatagctgacatattgatgtgcttgctgacttattctctactga 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggccaggacctacagtatagctgacatattgatgtgcttgctgacttattctctactga 300
Query: 301 agttcctcactggtgggtattcttacagggtataatgagtcatcttttatgatgattggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agttcctcactggtgggtattcttacagggtataatgagtcatcttttatgatgattggt 240
Query: 361 tgagacatagcacctttcccagacatgacctggaaattc--------tgtgtgtgtgtgt 412
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 239 tgagacatagcacctttcccagacatgacctggaaattctgtgtgtgtgtgtgtgtgtgt 180
Query: 413 gtgtgtgtgtgtgtgtgtgtgttcatctaagct---cagcactagaatcaagcacta-gc 468
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 179 gtgtgtgtgtgtgtgtgtgtgttcatctaagctcagcagcactagaatcaagcactaggc 120
Query: 469 tgatccaatgcctatgagttactttcagcacgac-ttttttgctgtctatttccccacaa 527
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 119 tgatccaatgcctatgagttactttcagcactactttttttgctgtctatttccccacaa 60
Query: 528 aacaaaacaaaaataaggtagcatgtgagtactatgtataatatgtctacttacagtct 586
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 59 aacaaaacaaaaataaggtagcatgtgagttctatgtataatatgtctacttacagtct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_k01.g1 MSMg01no479_k01.g1 CHROMAT_FILE:
MSMg01no479_k01.g1 PHD_FILE: MSMg01no479_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:42 2005
(674 letters)
>mm_chr3_76963721_76964792
Length = 1072
Score = 1226 bits (634), Expect = 0.0
Identities = 663/674 (98%), Gaps = 4/674 (0%)
Strand = Plus / Plus
Query: 1 atattgttttgtgtatgtgtacatgtgtgagtacatatgaagtctagaagaagttgtcaa 60
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atattgttgtgtgtatgtgtacatgtgtgagtacatatgaagtct---agaagttgtcaa 257
Query: 61 atccactgaattacagttataaatagatgtattatttgcttatgttactaaactaatgtt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atccactgaattacagttataaatagatgtattatttgcttatgttactaaactaatgtc 317
Query: 121 agctactagaaccacatacatacagccatagtagcccatttaaactatggta-ttttttt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 318 agctactagaaccacatacatacagccatagtagcccatttaaactatggtatttttttt 377
Query: 180 ctgacagaaaaattatgggaaataattcagagacattttctgaattagtaatatttgcca 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctgacagaaaaactatgggaaataattcagagacattttctgaattagtaatatttgcca 437
Query: 240 aaaatatcatatgataatgcaatatttaaagtttattagtatgtagtatttttatattct 299
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 aaaatatcatatggtaatgcaatatttaaagtttattagtatgtaatatttttatattct 497
Query: 300 acgtgaactgatgtattgaacctgttttatgaatttgcatgaaatactttagtatttgtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acgtgaactgatgtattgaacctgttttatgaatttgcatgaaatactttagtatttgtt 557
Query: 360 catattttcaccactttgaatgtataaaactgtcacagttttggttaagtctcacaatta 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 558 catattttcaccactttgaatgtataaaactgacacagttttggttaagtctcacaatta 617
Query: 420 aatttctcaattggatctgaattgttttcagcacgttggaagagcaccttacaagtcatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatttctcaattggatctgaattgttttcagcacgttggaagagcaccttacaagtcatt 677
Query: 480 agaaaggctgaagtaaattattttccacattcaaatgtactgacaatcattccgcgtttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaaaggctgaagtaaattattttccacattcaaatgtactgacaatcattccgcgtttg 737
Query: 540 agaaatttgttctggatagtttgtatgtcagttggcacaggaaaaagtcatttggaaaaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agaaatttgttctggatagtttgtatgtcagttggcacaggaaaaagtcatttggaaaaa 797
Query: 600 ttattatcagttgagaaaatatgtccataagagatccactggactagtctatagggtatt 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttaatatcagttgagaaaatatgtccataagagatccactggactagtctatagggtatt 857
Query: 660 taattaactgatga 673
||||||||||||||
Sbjct: 858 taattaactgatga 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1072
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1062
Effective search space: 705168
Effective search space used: 705168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
