CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCTTTCCTGATTAGGAAGGNCAGGGGATCTTCCTGTTTCTAATC
CTATAGCCCTGGGGTTATAGATATTAGCCACCATGTCTGATATTTACATG
GGTATTGAGCATCCAAGCTCATGAATAACAAATTTATACTCATAAAGCAA
GCACTCTATTAACTGATCCATATCCCTCGAGCCCCTAGTATATTTCTTAA
TAAGACTAGTATAAACCAAGCTTCTTGATCTACAGATTTCAATACTAATG
CTATGCTAGTAGGTATTTAAATAGTATTAACAGTTTCTTACATCCAAATC
AGAGCTCCCATGTCAGAGTTTCTCCATCAACTTCATTCTCTACAGAAGAT
TGGAATTCTTACTAGCTCTGTTGGAAACAAGGATGCTTTTAGCTAAGATT
TCCTACTCCATTGGTAAAGAAGAGTTGGTAGATTTAGTACAATTCTTAAT
GGCACCGTGGTTTCACAATCTGAAGGTTATTAGCTTTCCCATCCCTTAAT
AAGAACATTGGTAGTCTTCTCAATATTTTAAGGAGTAACTGACTTATCCT
GTTCAGCTCTAGGAATTCCAGAAGGTGTCTGTTTTCAGGAGAAGGATGCA
TTGTCTACATTTAATACCTGTCATTTAGTATAGCTACCTTCACACATTTC
CATCATATTTGGTGATCCTTCTGAATGTTCTAAAGCTACACTA

ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCCTTGGTTTACTGTGGATAATTGA
CCTTGACTTTCCATTACTTTGCTTTCTCATTCTATCTTTTTCTTATCTTT
CAGAATAGATAGATTGAATTTAGGGTTTGGCAACAAAGAAGATTTTACTA
TGTTGTCTAAATAATTTGTAAATTGACTTTTATATGTAAATTTTATATTT
ACATTCTAGCAATCAGTCACAGCAGAGTGACAGATATGTATGTGGGGGCT
TTTCTTTTTAATTATCTATGGAAACAAATGTCAGACTTTGCTTTTTAAAC
TTGCCTTACTAACACTGACATCTAAAATAATAAATTTTTCTTTTGATTTT
TGTTCTATATACAGGGTGTTAACAGTGTAGCCCAGGCTAGTCTAGTACTC
ACAAGCCTAAAACTATTCTAGTGTTCTAGCCTAAAACTAATGGCCTCCTT
CTGCCTCTCAGGTGCTAGCATTACAGATGTTCCTCCTGTCACAGACATGT
TCTAACCCATGTATAATTTTGTGCCATACACTGTTTATTTACTTGACTTT
TCTGTCAGCTGAGAATGGGCATTTTTGTAGATCCATGATGCTATAAGTAA
ACAGGAAACATTAGTACCTGACTTGAAAAAGAACCCCAAGTTTTATTGAA
GAAGTTTGAGTTATAATTGACTTGTTTCTTTGTTTAAC

Query= MSMg01no479_k14.b1 MSMg01no479_k14.b1 CHROMAT_FILE:
MSMg01no479_k14.b1 PHD_FILE: MSMg01no479_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:44 2005
         (312 letters)



>mm_chr3_24697862_24698573
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagtattaacagtttcttacatccaaatcagagctcccatgtcagagtttctccatcaa 60
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 atagtattaactgtttcttacatccaaatcagagctcccgtgtcagagtttctccatcaa 260

                                                                       
Query: 61  cttcattctctacagaagattggaattcttactagctctgttggaaacaaggatgctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcattctctacagaagattggaattcttactagctctgttggaaacaaggatgctttt 320

                                                                       
Query: 121 agctaagatttcctactccattggtaaagaagagttggtagatttagtacaattcttaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 agctaagatttcctactccattggtaaagaagagttggtagatttagtacaattctcaat 380

                                                                       
Query: 181 ggcaccgtggtttcacaatctgaaggttattagctttcccatcccttaataagaacattg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaccgtggtttcagaatctgaaggttattagctttcccatcccttaataagaacattg 440

                                                                       
Query: 241 gtagtcttctcaatattttaaggagtaactgacttatcctgttcagctctaggaattcca 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gtagtcttctcaatattttaaggagtaactgacttatcttgttcagctctaggaattcca 500

                       
Query: 301 gaaggtgtctgt 312
           ||||||||||||
Sbjct: 501 gaaggtgtctgt 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no479_k14.g1 MSMg01no479_k14.g1 CHROMAT_FILE:
MSMg01no479_k14.g1 PHD_FILE: MSMg01no479_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:44 2005
         (666 letters)



>mm_chr3_24823937_24825002
          Length = 1066

 Score =  969 bits (501), Expect = 0.0
 Identities = 519/525 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctccttggtttactgtggataattgaccttgactttccattactttgctttctcattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcctccttggtttactgtggataattgaccttgactttccattactttgctttctcattc 466

                                                                       
Query: 61  tatctttttcttatctttcagaatagatagattgaatttagggtttggcaacaaagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tatctttttcttatctttcagaatagatagattgaatttagggtttggcaacaaagaaga 406

                                                                       
Query: 121 ttttactatgttgtctaaataatttgtaaattgacttttatatgtaaattttatatttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttttactatgttgtctaaataatttgtaaattgacttttatatgtaaattttatatttac 346

                                                                       
Query: 181 attctagcaatcagtcacagcagagtgacagatatgtatgtgggggcttttctttttaat 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atcctagcaatcagtcacagcagagtgacagatatgtatgtgggggcttttctttttaat 286

                                                                       
Query: 241 tatctatggaaacaaatgtcagactttgctttttaaacttgccttactaacactgacatc 300
           ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 285 tatctatggaaacgaatgtcagacttcgctttttaaagttgccttactaacactgacatc 226

                                                                       
Query: 301 taaaataataaatttttcttttgatttttgttctatatacagggtgttaacagtgtagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 taaaataataaatttttcttttgatttttgttctatatacagggtgttaacagtgtagcc 166

                                                                       
Query: 361 caggctagtctagtactcacaagcctaaaactattctagtgttctagcctaaaactaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 caggctagtctagtactcacaagcctaaaactattctagtgttctagcctaaaactaatg 106

                                                                       
Query: 421 gcctccttctgcctctcaggtgctagcattacagatgttcctcctgtcacagacatgttc 480
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 105 gcctctttctgcctctcaggtgctagcattacagatgctcctcctgtcacagacatgttc 46

                                                        
Query: 481 taacccatgtataattttgtgccatacactgtttatttacttgac 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  taacccatgtataattttgtgccatacactgtttatttacttgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)