Query= MSMg01no480_a08.b1 MSMg01no480_a08.b1 CHROMAT_FILE:
MSMg01no480_a08.b1 PHD_FILE: MSMg01no480_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:12 2005
(561 letters)
>mm_chr3_119121234_119122194
Length = 961
Score = 948 bits (490), Expect = 0.0
Identities = 505/516 (97%), Gaps = 10/516 (1%)
Strand = Plus / Minus
Query: 46 agcctccgttatctgctgccagggaataaagcacatttctcattttgctgtgccacatgt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 agcctccgttatctgctgccagggaataaagcacatttctcattttgctgtgccacatgt 902
Query: 106 gagcactgtcctgtcagttatttggggccagggagcaaagttactctggaaggaggcact 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gagcactgtcctgtcagttatttggggccagggagcaaagttactctggaaggaggcact 842
Query: 166 gcgtgctttaccttatgtggcactgtacgtgcctgtgtgcatgggtctctctctctctct 225
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 841 gcgtgctttaccttatgtggcactgtacatgcctgtgtgcatgggtctctctctctctct 782
Query: 226 ctctctctctctctctttttctctctctctgcatgcatgtttatgcatatgactttttca 285
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctctctctc----------tctctctctctgcatgcatgtttatgcatatgactttttca 732
Query: 286 gatggtctcagactaccttgtagaagcacctatgaagataccgtggaagttcacatctct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gatggtctcagactaccttgtagaagcacctatgaagataccgtggaagttcacatctct 672
Query: 346 ttctattcctttctcttacccttcttttcagctttcttgtactggttttgaagacctgtc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttctattcctttctcttacccttcttttcagctttcttgtactggttttgaagacctgtc 612
Query: 406 tctgactcagacttctctttcctttccctttccagactaagcagttttattatttagcca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tctgactcagacttctctttcctttccctttccagactaagcagttttattatttagcca 552
Query: 466 catgcatgataaatgctatttctatgaagggaaaccatgatgtggggatgataaagagaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 catgcatgataaatgctatttctatgaagggaaaccatgatgtggggatgataaagagaa 492
Query: 526 gatcgtctggatgctggggcttctctagggtcctgt 561
||||||||||||||||||||||||||||||||||||
Sbjct: 491 gatcgtctggatgctggggcttctctagggtcctgt 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_a08.g1 MSMg01no480_a08.g1 CHROMAT_FILE:
MSMg01no480_a08.g1 PHD_FILE: MSMg01no480_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:13 2005
(489 letters)
>mm_chr3_118925837_118926725
Length = 889
Score = 915 bits (473), Expect = 0.0
Identities = 485/489 (99%), Gaps = 1/489 (0%)
Strand = Plus / Plus
Query: 1 tctgtaaattctggagattgaatacggacagatattgagtaaagagcaaaccttgactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtaaattctggagattgaatacggacagatattgagtaaagagcaaaccttgactaa 260
Query: 61 actgacttgacatgaataagagtttgaaagaaaccttatctgactagtgtggtggtttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgacttgacatgaataagagtttgaaagaaaccttatctgactagtgtggtggtttgt 320
Query: 121 atatgcttggtccagggagtggcactattaggaagtgtggccttgttggagtaggtatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgcttggtccagggagtggcactattaggaagtgtggccttgttggagtaggtatgg 380
Query: 181 ccttgttggagaaaatgtgtcactgtgtgagtggaccctccttctaaacacatgggaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgttggagaaaatgtgtcactgtgtgagtggaccctccttctaaacacatgggaggc 440
Query: 241 agtcttctcccatttgccttcgaaaaaaaggtgtagaactctcagttcctccatcgctgt 300
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 441 agtcttctcccatttgccttcggaaaaa-ggtgtagaactctcagttcctccatcgctgt 499
Query: 301 gttttcctggatgctgctgtgcttcttgtcttgatgataatggactgaacctctgaacct 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctttcctggatgctgctgtgcttcttgtcttgatgataatggactgaacctctgaacct 559
Query: 361 ataagctagccccaactaaatgttgtcctttataagagttgccttggtcatggtgtctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ataagctagccccaactaaatgttgtcctttataagagttgccttggtcatggtgtctct 619
Query: 421 tcatagcaatgcaaactgtaaccaacacaactagcttccctttcaatgttcaggccaaag 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcatagcaatgcaaactctaaccaacacaactagcttccctttcaatgttcaggccaaag 679
Query: 481 gaactcagc 489
|||||||||
Sbjct: 680 gaactcagc 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
