ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAAATGATTACCTTTCAGATTTCAGCAAATGCTTAGTGAACAA
TCCTTGTGAAATGAACATTATAAAAAAATTACCCACTGTCTTTTGTTCAG
AATTATAGAGATTTCTGTTTATCTGAGGATTTTCCGGACAACGTTTCACA
TGCTTCTAGACCATTTATTCCTAGAAGAAGACTTTTTTTGTCTTCTATTT
TGTTTTTGCTTTTTTATTTTCAGAACATAATCCCCCATGAATGGAAGTAT
GTGGGAAAAAAAGTGCACAGATAAAAGAATTTATTCCCTCTTCTTGCTAA
GTGTGCAAGACCATTGAGCTTTTAACATCCATCACCAAATCTATTTAATA
GATATTTACATGAAAGCATGGCATGTAATTTCTATGATATTGAAAAGTTC
TTTCATACATTTGTCATTTCTGTTCACATTTAACAACACTCAAATATCAA
TTGTTCATGTTTTAAGAAGTCTTATATTTTAGTTCCCATAAACATCTAAC
TTCGGTATTCCTGATTGGGTGTAGGTTGTGAAGAAATACAGATTCCTGAT
ACTACTAACTTGAGTTTTGACATAATTTTTTTTTACTAAAAATTTTGTTT
CCACCTCAGCCCCCATTGGAAAAGGGGATTAACTTTGGACCTTGGCCCAT
TTATTGATAAGAAAT

CGATGATGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCCCATATATAGACACCAAACCCAA
ACACTATTGCAGATGCCAAGAAGTGCTTGCTGAGAGGAGCCTGATACAGC
TGTCTCCTGAGAGGGTCTGCCCAATACAGATACTGATGCTTACAGCCAAC
CATTGGACTGAACATGGAGACCCCAATGGAGGAGTTAAAGAAAGGACTGA
AGGAGCAGAAGGGGTTGGCAGTCCCATAGGAAGAACAACAATATCAATCA
ACCAGACACTGCAGATCTCCAGGGACTAAACCACGAACCAAAGAGTAAAC
ATGGAAGTACCCATGGCTCCAGCCACACATGTAGCAGAGGATGACATTGT
CTGGCATCAACAGGAGTAGAAGTCCTTGGTCTTGTGAAGGCTTGATTCTC
CAGTGTAGGGTAATGCCAGAGTGGTGAATTAGAAGTGGTAAATAGGAGGA
GAAGCACCCTCATAGAATCAGGGGGAGGGGTGATGGGATAGTGTGGTTCT
AGAAGATAAACCAGGAAAGGGCATAATATTTGAAATCTAAATATACCAAA
TATTCCATAAAAATTAACAAATTAAAAGAATTTTTTCCCAAAAATATTTT
ATTACAAATATATTCTATTCTTTAGCCCATATTCCCTCTTGTACACTCCC
ACTTTCCTCCATACCACAAATGGCATCCTTTCCT

Query= MSMg01no480_c07.b1 MSMg01no480_c07.b1 CHROMAT_FILE:
MSMg01no480_c07.b1 PHD_FILE: MSMg01no480_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:22 2005
         (503 letters)



>mm_chr3_24546773_24547671
          Length = 899

 Score =  828 bits (428), Expect = 0.0
 Identities = 486/510 (95%), Gaps = 11/510 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatttcagcaaatgcttagtgaacaatccttgtgaaatgaacattataaaaaaattacc 60
           |||||||||||||||||||||||| |||| |||||||| ||||||||| | |||||||||
Sbjct: 608 agatttcagcaaatgcttagtgaataatctttgtgaaacgaacattat-acaaaattacc 550

                                                                       
Query: 61  cactgtcttttgttcagaattatagagatttctgtttatctgaggattttccggacaacg 120
           |||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 549 cactgtattttgttcagaattatagagatttctgcttatctgaggattttccagacaatg 490

                                                                       
Query: 121 tttcacatgcttctagaccatttattcctagaagaagactttttttgtcttctattttgt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 489 tttcacatgcttctagaccatttattcctagaagaagac-ttttttgtcttctattttgt 431

                                                                       
Query: 181 ttttgcttttttattttcagaacataatcccccatgaatggaagtatgtgggaaaaaaag 240
           |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| |
Sbjct: 430 ttttgcttttttattttcagaaaataatcccccatgaatggaagtatgtgg--aaaaatg 373

                                                                       
Query: 241 tgcacagataaaagaatttattccctcttcttgctaagtgtgcaagaccattgagctttt 300
           ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 372 tgcacggataaaataatttattccctcttcttgctaagtgtgcaagacccttgagctttt 313

                                                                       
Query: 301 aacatccatcaccaaatctatttaatagatatttacatgaaagcatggcatgtaatttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aacatccatcaccaaatctatttaatagatatttacatgaaagcatggcatgtaatttct 253

                                                                       
Query: 361 atgatattgaaaagttctttcatacatttgtcatttctgttc-------acatttaacaa 413
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 252 atgatattgaaaagttctttcatacatttgtcatttctgttcacatttaacatttaacaa 193

                                                                       
Query: 414 cactcaaatatcaattgttcatgttttaagaagtcttatattttagttcccataaacatc 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cactcaaatatcaattgttcatgttttaagaagtcttatattttagttcccataaacatc 133

                                         
Query: 474 taacttcggtattcctgattgggtgtaggt 503
           ||||||||||||||||||||||||||||||
Sbjct: 132 taacttcggtattcctgattgggtgtaggt 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 899
Length adjustment: 10
Effective length of query: 493
Effective length of database: 889
Effective search space:   438277
Effective search space used:   438277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)