Query= MSMg01no480_c13.b1 MSMg01no480_c13.b1 CHROMAT_FILE:
MSMg01no480_c13.b1 PHD_FILE: MSMg01no480_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:23 2005
(638 letters)
>mm_chr3_40652363_40653402
Length = 1040
Score = 1131 bits (585), Expect = 0.0
Identities = 629/648 (97%), Gaps = 11/648 (1%)
Strand = Plus / Plus
Query: 1 tgaggacacagacaactcctaaagtctaaataaactcagaaacatatcaaaggtagcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggacacagacaactcctaaagtctaaataaactcagaaacatatcaaaggtagcaat 260
Query: 61 caaagcaacatgggggaggacaa-cagtggtttttgtttgtattgttttgttttatattt 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagcaacatgggggaggacaaacagtggtttttgtttgtattgttttgttttatattt 320
Query: 120 tttaaatagtccaccaagaaaaaagagccaaagttgaagagactaaacctctctgaatgt 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaatagtccaccaagaaaaaagagtcaaagttgaagagactaaacctctctgaatgt 380
Query: 180 attactcaaaaattggggacttaggtatttgtccccccactctacccccttttctctttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attactcaaaaattggggacttaggtatttgtccccccactctacccccttttctctttt 440
Query: 240 ggtgattctagga-ttccactaaacctttcaagtgtttaacgggaaagttatcaactgag 298
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgatgctaggaattccactaaacctttcaagtgtttaacgggaaagttatcaactgag 500
Query: 299 ctatacatccaaccccttgttgggttttcttcaatgattttttagaatagttacatccct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatacatccaaccccttgttgggttttcttcaatgattttttagaatagttacatccct 560
Query: 359 cccacttattttcctactcttcttcagtataaaagcaattaaatcagtagcctaagaata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccacttattttcctactcttcttcagtataaaagcaattaaatcagtagcctaagaata 620
Query: 419 gctggtgtgtgtgtgtgtgtgtgtgtgtgtgtg------agagagagagagagagacaga 472
||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 621 gctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagacagagacagagacaga 680
Query: 473 ga--cagagagacagagagagagagagctagagagattttaatgtgtgacatgggctgga 530
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagacagagagacagagagagagcgagctagagagattttaatgtgtgacatgggctgga 740
Query: 531 gaagatgatccagaccttanaagcacttatggctcttgcagaggatcaaaattcaatttc 590
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ga-gttgatccagaccttaaaagcacttatggctcttgcagaggatcaaaattcaatttc 799
Query: 591 cacatggtaacttgtcatctaattctgaggaatctgatgccctcttta 638
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 800 cacatggtaacatgtcatctaattctgaggaatctgatgccctcttta 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1040
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1030
Effective search space: 646840
Effective search space used: 646840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_c13.g1 MSMg01no480_c13.g1 CHROMAT_FILE:
MSMg01no480_c13.g1 PHD_FILE: MSMg01no480_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:23 2005
(346 letters)
>mm_chr3_40810155_40810900
Length = 746
Score = 661 bits (342), Expect = 0.0
Identities = 345/346 (99%)
Strand = Plus / Minus
Query: 1 gttaggagcacatactgttctttcagaactgggcttggctcccagctttcattcagtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gttaggagcacatactgttctttcagaactgggcttggctcccagctttcattcagtggg 487
Query: 61 ctcctgcatgcacacggtacatgcaaattcatggagggacaaacctacagaaaaatcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctcctgcatgcacacggtacatgcaaattcatggagggacaaacctacagaaaaatcact 427
Query: 121 ctttaagggaaaagaagtaaaggtgataactgtttcccttctcattctcccccaggacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctttaagggaaaagaagtaaaggtgataactgtttcccttctcattctcccccaggacag 367
Query: 181 ccgtggtatgctgccagtcaaactggtgcagttctggagaaacactcaggtgagctaaac 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ccgtggtatgccgccagtcaaactggtgcagttctggagaaacactcaggtgagctaaac 307
Query: 241 taaacccactccctccacctgctgcaaagaagacttaacaaagctaagcccgattaggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 taaacccactccctccacctgctgcaaagaagacttaacaaagctaagcccgattaggtg 247
Query: 301 gctgctcaatctttactctcagagttctctttcagcttcgtgagca 346
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gctgctcaatctttactctcagagttctctttcagcttcgtgagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
