NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTACAGATTTCATTAGCCAACCCAGTATAATCAATGGCTG
CCAAATATTAGTCAAAGGCAGGGATCACTTGTGCCTCAGAACTTCTTAGT
ACACAAACATGCACAGGGGCCTTGGGGAGAACATTACTCCACTGCACTTT
GGCAGGTTCTCACTAAGGTAGACATTCAAATAGAAGGTTACACATTCATA
GGAACCTCCTTTCTGGGGGGTGGGGGCCATGAAATTATAATTATATCTCA
TTCAAAACATGTCATTAGAAACTGCAGGCTGTCTCTGCTCTGAAATTAAT
AGCATACTTCAGTTAATGCACAAGTGGACAACTCTTGACTACAACTTCCC
CTCAGCGTCAATGAGAAGAATCTTAAAGATGAAACACCTGATGGTACATT
TCTTTCACATCCTGGCTAAATTATCATATCATGCATGCTAAAATATTCCA
ATGAAGTCTGTTATAGCTCACTTAGATACTAAAAACCTTGAAAGGCCTTT
TAAACGTGAGCCATTCTAAAGAAGCAATTTAAAGGAAACCCATAAATCTT
GACACTGGATTGTCCACATCAGTCTCTGGAGGTTTGAGGCAGGCTAAGTA
CTCCAGCTGCTAAAGGAAGGCTGACAAGTCACAGATAAGGGGGTGTTTCA
TAAAAGAAAGCAACTGTCCCC

NNNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGAAGGTTACCTATT
CAGTAACATTCAAATTTACTTCTAGCAGAGACAGGGGAACTAATTAGGCA
TTACAAAGAAAGGAGCTAGAATAGCTCAGGGCTAGTCTGCAGAGTGATTA
CTTAAAACTTAGGACAGTAGCCTCACCCAAACTAGGGAATACACAATGGC
CTAGTGAATAGGTGAGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGA
CAGGTTTCTTCACTAGGCCCAAAGGATCAGCATAATCAGGCATTTACTAA
GAACCCCTGATGGTGGGTTTAACAATAGCATTACATCTGGCTCCCTTCTA
AGTGGTAAATGGCTGCCTGGTCCCTGCCATCTTTTGATGTATGCGTTCCT
TTTGTTTTGTGTCACTGTAATTTAGTGGATGTGTTCGCCTGGTTTCTTGT
TATTCCTCTGTATAAAAAGTTTGATGCTCAATTTTACAAATTACACTCAG
ATTCAACACTCTCTCTCATGTCGTCTCTGTTTGTCATCCACATTCACTGA
CTCCTTCGCCCCCCTGCAACCAGAGACCCATTCCACACAGATCTGAGACC
CAAAGAAAGGAGTTAGTCTGTGGCAACATGCTCCACAAAGGTGAAGGGTC
AGAGCCAGCTCAGAGGAGN

Query= MSMg01no480_f18.b1 MSMg01no480_f18.b1 CHROMAT_FILE:
MSMg01no480_f18.b1 PHD_FILE: MSMg01no480_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:38 2005
         (633 letters)



>mm_chr3_14088674_14089707
          Length = 1034

 Score = 1133 bits (586), Expect = 0.0
 Identities = 615/626 (98%), Gaps = 5/626 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattctacagatttca--ttagccaacccagtataatcaatggctgccaaatattagtc 68
           ||||||||||||   ||  ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctacagaa--caaattagccagcccagtataatcaatggctgccaaatattagtc 268

                                                                       
Query: 69  aaaggcagggatcacttgtgcctcagaacttcttagtacacaaacatgcacagggg-cct 127
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 269 aaaggcagggatcacttgtgcctcagaacttcttagtacacatacatgcacagggggcct 328

                                                                       
Query: 128 tggggagaacattactccactgcactttggcaggttctcactaaggtagacattcaaata 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tggggagaacattactccactgcactttggcaggttctcactaaggtagacattcaaata 388

                                                                       
Query: 188 gaaggttacacattcataggaacctcctttctggggggtgggggccatgaaattataatt 247
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 389 gaaggttgcacattcataggaacctcctttctggggggtggggggcatgaaattataatt 448

                                                                       
Query: 248 atatctcattcaaaacatgtcattagaaactgcaggctgtctctgctctgaaattaatag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atatctcattcaaaacatgtcattagaaactgcaggctgtctctgctctgaaattaatag 508

                                                                       
Query: 308 catacttcagttaatgcacaagtggacaactcttgactacaacttcccctcagcgtcaat 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 catacttcagttaatgcacaagtggacaactcttgactacaacttcccctcagcgtcaat 568

                                                                       
Query: 368 gagaagaatcttaaagatgaaacacctgatggtacatttctttcacatcctggctaaatt 427
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 569 gagaagaatcttaaagatgaaacacctgatggtacctttctttcacatcctggctaaatt 628

                                                                       
Query: 428 atcatatcatgcatgctaaaatattccaatgaagtctgttatagctcacttagatactaa 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atcatatcatgcatgctaaaatattccaatgaagtctgttatagctcacttagatactaa 688

                                                                       
Query: 488 aaaccttgaaaggccttttaaacgtgagccattctaaagaagcaatttaaaggaaaccca 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaaccttgaaaggccttttaaacgtgagccattctaaagaagcaatttaaaggaaaccca 748

                                                                       
Query: 548 taaatcttgacactggattgtccacatcagtctctggaggtttgaggcaggctaagtact 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 taaatcttgacactggattgtccacatcagtctctggaggtttgaggcaggctaagtact 808

                                     
Query: 608 ccagctgctaaaggaaggctgacaag 633
           ||||||||||||||||||||||||||
Sbjct: 809 ccagctgctaaaggaaggctgacaag 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space:   637952
Effective search space used:   637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)