Query= MSMg01no480_l13.b1 MSMg01no480_l13.b1 CHROMAT_FILE:
MSMg01no480_l13.b1 PHD_FILE: MSMg01no480_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:07 2005
(638 letters)
>mm_chr3_56515718_56516755
Length = 1038
Score = 1172 bits (606), Expect = 0.0
Identities = 630/642 (98%), Gaps = 8/642 (1%)
Strand = Plus / Minus
Query: 1 tgggggaatattatatataaaagcattgcagatagagtggagatgaaagatttaactgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgggggaatattatatataaaagcattgcagatagagtggagatgaaagatttaactgca 779
Query: 61 cagtattttaagattaaaccaagatttcaaacaaagcctgaggtcagaatgagtattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cagtattttaagattaaaccaagatttcaaacaaagcctgaggtcagaatgagtattctt 719
Query: 121 agcttgtacatggaatattgtttcagaagtctgtgccttgagattatttgttaccttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agcttgtacatggaatattgtttcagaagtctgtgccttgagattatttgttaccttaaa 659
Query: 181 tttttcaaatatgaatttctcagttactgtcataacactcatgacatttgccaaatgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tttttcaaatatgaatttctcagttactgtcataacactcatgacatttgccaaatgttt 599
Query: 241 tctccatttttt----tagataacatatttttctctaaaataattcattcttgttataac 296
|||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tctcca----ttaaaatagataacatatttttctctaaaataattcattcttgttataac 543
Query: 297 atgaccctggatctggggaatcactaattgataaaacattcaaccagtgtgtccgtggtc 356
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atgaccctggatctgaggaatcactaattgataaaacattcaaccagtgtgtccgtggtc 483
Query: 357 ctaggttcagtccttaatcctcagaatcaaaggccttaatgtatgatccaaactggttgt 416
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 482 ctaggttcagtccttaatcctcagaatcaaaggccttaatgtatgatagaaactggttgt 423
Query: 417 ttatgtgttgtttcccagcaatacttctaaaatgaagtgccctccaatttggttcaatcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttatgtgttgtttcccagcaatacttctaaaatgaagtgccctccaatttggttcaatcc 363
Query: 477 tgactccaattttagatttaccatgaactgcacatgtcaaacacttgagtccttaaaaag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgactccaattttagatttaccatgaactgcacatgtcaaacacttgagtccttaaaaag 303
Query: 537 cgtcccccttctaatggtaaccacaattctaactattcctaagtatcctttatatattcc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cgtcccccttctaatggtaaccacaattctaactattcctaagtatcctttatatattcc 243
Query: 597 cagctggcatccaatccaggtcttctttaatatactggagct 638
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 242 cagctgtcatccaatccaggtcttctttaatatactggagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_l13.g1 MSMg01no480_l13.g1 CHROMAT_FILE:
MSMg01no480_l13.g1 PHD_FILE: MSMg01no480_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:07 2005
(567 letters)
>mm_chr3_56339489_56340456
Length = 968
Score = 994 bits (514), Expect = 0.0
Identities = 557/576 (96%), Gaps = 9/576 (1%)
Strand = Plus / Plus
Query: 1 tggtcctgacctttacatcttacttgggtcaacttgttcctctttaggttttctctcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcctgacctttacatcttacttgggtcaacttgttcctctttaggttttctctcata 260
Query: 61 ttgttgccttgctgagactgttccctgacactgggctggaagcgatgagcacttaggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttgccttgctgagactgttccctgacactgggctggaagcgatgagcacttaggcag 320
Query: 121 gagcaggccctctctgtggatgcaggagacaggctgggaagtctgagaccagtctttctc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gagcaggccctctctgtggatgcaggagacaggctgggaagtctgagaccagtcagcctc 380
Query: 181 agaagcaccacctctcttgatttgcctttcacactgtttgcatcttgttttccttgggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagcaccacctctcttgatttgcctttcacactgtttgcatcttgttttccttgggaa 440
Query: 241 aaat-tgtactgatgatgttttgctataatcaagcagctaataatagctcctaaatcttc 299
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 aaatgtgtactgatgatgttttgctataatcaagcagctaaaaatagctcctaaatcttc 500
Query: 300 cctccaggtgtggattcttttagtactctggtcaaggcgtggaaatctttctggttattt 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 cctccaggtgtggattcttttagtactctggtcaaggcatggaaatctttctggttattt 560
Query: 360 ggatttttgatacaatctgattagatggcctaatgtgtctgttttctgtacccacactgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatttttgatacaatctgattagatggcctaatgtgtctgttttctgtacccacactgt 620
Query: 420 caatagcttaattttaaacctatgttgaagttttttttaaaaagaaaatcaacagtaggg 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 caatagcttaattttaaacctatgttgaagtttttttaaaaaagaaaatcaacagtaggg 680
Query: 480 cctgagaagagatgcctcag--------agtaccagctgctcttgcagaggacttccggt 531
||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 681 tctgagaagagatgcctcagtggttaagagtaccagctgctcttgcagaggacttcgggt 740
Query: 532 accattctctgcacccaaatcattattcacaaccat 567
||||||||||||||||||||||||||||||||||||
Sbjct: 741 accattctctgcacccaaatcattattcacaaccat 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
