BAC Information

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BAC

Clone NameMSMg01-480O17
Chromosome3 (Build37)
Map Location 26,428,045 - 26,428,542
singlet/doubletsinglet
Overlap genenone
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480O17.T7 (MSMg01no480_o17.b1)MSMg01-480O17.TJ (MSMg01no480_o17.g1)
ACCAG561446AG561447
length742723
length of high quality
(start - end)
498 (72 - 569)514 (125 - 638)
definitionCHROMAT_FILE: MSMg01no480_o17.b1 PHD_FILE: MSMg01no480_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:22 2005CHROMAT_FILE: MSMg01no480_o17.g1 PHD_FILE: MSMg01no480_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGA
ATTCAAGAGATATCCCAAAGAGTTCTGAGTATGTAGGGCTGTGGTAATGC
AGAGAATGGGGAACCGAAACAGATTTCCAGGGTGGTGGAAGGAGATCAGG
TAAAGCACTGAAAGGCCAAGAGCCCCGAAGAACATGGACTTAATGTTGGA
TGTGTCTGTGGTGCCTAAAGCCATCCAGAGACATGAGCTCACCCAATACT
GAGTGACAATTGAGAATTTCTGTTATCCGTGGGCTCAGTATGGTTCCCTT
TAACAGATATCAAAATATTTCTTTTGAATATGGAAATGATTTATTCACAC
ACATTTCAAAAATCGCTTTTCCTTTGGCTTTTCTGTTTGGAAAAACGTAG
CTCTAAAGAGCCTAAGGGAATTGAAAGAAATCTTTCCATGAAAATATACA
TTTCTCTTTACAGTCGTGGATGTGCAGATGGACACATGGAGGCCAGAGGA
CAGCTGCCTCTGGTAGCTTCTCCCTTTCTAGTATGTAGGTTCCAGACACT
GAACTCACAACCTCAGGCAGGCCAGGAACTGCTTTTATCTACTGAGTTAC
CCTAGCAGCCATATTGTAACATTTTTTTTTTTTGTCCCACTCATTTTCTC
ACCCTTTTTCAAATTTTCACTTCCTAAAGGAAATTTGCTTTATTTAACTT
TTAGCTCACCTTATATATGTAGCTTCCTTTGGCTTACATGAA
ACAAGATAGTTGTAGGCCTGGGGGNCGGCTGGTTCCAAACCAGGGGGGAA
NNANAGAAGTTTCCCAAAAAGGGCACCAGAGGAAAACCAAATACCTGGAA
AAAATGTCCAACATCCTTAACCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGT
GACAGCAGATGCTGGCAAGGATGTGTAGAAAGAGGAACACTCCTCCATTG
TTGTTGGGATTGCAAGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGT
TCCTCAAAAAATTGTTCTAGTTCTACCGGAGGATCCCACAATACCTCTCC
TGGGCATATATCCAGAAGATGTTCCAAAAGGCAAGAAGGACATATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GGCAAATGAATGGACCTGGACAGCATCATCCTGAGTGAGGTAACTCAATC
ACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATTATTCCT
TATACTTAGAATACCGAAGATATAAGATATAATTTGCGAAACACATGAAG
CCTAGGAAGAACAAATTGGGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_o17.b1 MSMg01no480_o17.b1 CHROMAT_FILE:
MSMg01no480_o17.b1 PHD_FILE: MSMg01no480_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:22 2005
         (498 letters)



>mm_chr3_26427845_26428742
          Length = 898

 Score =  870 bits (450), Expect = 0.0
 Identities = 486/498 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttctgagtatgtagggctgtggtaatgcagagaatggggaaccgaaacagatttccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttctgagtatgtagggctgtggtaatgcagagaatggggaaccgaaacagatttccagg 260

                                                                       
Query: 61  gtggtggaaggagatcaggtaaagcactgaaaggccaagagccccgaagaacatggactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtggaaggagatcaggtaaagcactgaaaggccaagagccccgaagaacatggactt 320

                                                                       
Query: 121 aatgttggatgtgtctgtggtgcctaaagccatccagagacatgagctcacccaatactg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aatgttggatgtgtctgtggtgcctaaagccatccagagacatgagctcacccagtactg 380

                                                                       
Query: 181 agtgacaattgagaatttctgttatccgtgggctcagtatggttccctttaacagatatc 240
           |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 381 agtggcaattgagaatttctgttatccgtgtactcagtatggttccctttaacagatatc 440

                                                                       
Query: 241 aaaatatttcttttgaatatggaaatgatttattcacacacatttcaaaaatcgcttttc 300
           ||||||   |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aaaataaaccttttgaatatggaaatgatttattcacacacatttcaaaaatcacttttc 500

                                                                       
Query: 301 ctttggcttttctgtttggaaaaacgtagctctaaagagcctaagggaattgaaagaaat 360
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 501 ctttggcttttctgtttggaaaaacatagctctaaagagcctaagggaattggaagaaat 560

                                                                       
Query: 361 ctttccatgaaaatatacatttctctttacagtcgtggatgtgcagatggacacatggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttccatgaaaatatacatttctctttacagtcgtggatgtgcagatggacacatggag 620

                                                                       
Query: 421 gccagaggacagctgcctctggtagcttctccctttctagtatgtaggttccagacactg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 gccagaggacagctgcctctggtagcttctccctttctagtatgtaggttccaggcactg 680

                             
Query: 481 aactcacaacctcaggca 498
           | ||||||||||||||||
Sbjct: 681 atctcacaacctcaggca 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)