Query= MSMg01no481_d14.b1 MSMg01no481_d14.b1 CHROMAT_FILE:
MSMg01no481_d14.b1 PHD_FILE: MSMg01no481_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:47 2005
(713 letters)
>mm_chr3_35307508_35308620
Length = 1113
Score = 1067 bits (552), Expect = 0.0
Identities = 580/594 (97%), Gaps = 8/594 (1%)
Strand = Plus / Minus
Query: 8 gaattcaccaaataaattacgatgaactgtttaaagcaatcaaggaaactcctccacatg 67
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaattcaccaaataaatgaagatgaactgtttaaagcaatcaaggaaactcctccacatg 543
Query: 68 atttatagacattcactcagtgcaaacaaaaacactgttagtcataccatttttagatta 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atttatagacattcactcagtgcaaacaaaaacactgttagtcataccatttttagatta 483
Query: 128 attggtttttaatgtaaagacaaacaaattgcagtttctgtacttgagactctcgaagta 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 attggtttttaatgtaaagacaaacaaattgcagtttctgtacttgagactctcgaagta 423
Query: 188 aagaaagaacgtcagaccgagcccccaaatgtggtatggatgagaggtcgtgagaactca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aagaaagaacgtcagaccgagcccccaaatgtggtatggatgagaggtcgtgagaactca 363
Query: 248 gaagagcgccttactgctcatcagagagaaaaccaacatggaaggaattcctggtaagcg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaagagcgccttactgctcatcagagagaaaaccaacatggaaggaattcctggtaagcg 303
Query: 308 gccagttacagaaagcctgggtctagaaggatgggtcccaaggcagatgggaaatgcctc 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 302 gccagttacagaaagcctgggtctagaaggatgggtcccaaggcagatgggaaacgcctc 243
Query: 368 gcctttggatgagttgtcctattgacgtcagcagt--------atgccctggctcttagt 419
||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 242 gcctttggatgagttgtcctattgacgtcagcagtgtggcgttatgccccagctcttagt 183
Query: 420 ggaacaaggaatccccctgaagggggccttgcgcccttcccgcttggaaatgtgacagaa 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 182 ggaacaaggaatccccctgaagggggccttgcgccctccccgcttggaaatgtgacagaa 123
Query: 480 agaagacagagtggtagagactttggaacagtttttcatccatgctttccaagagtcagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 agaagacagagtggtagagactttggaacagtttttcatccatgctttccaagagtcagt 63
Query: 540 ctaaaactctttattattattattattgtcacgggtgtagctagactgtggagt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctaaaactctttattattattattattgtcacgggtgtagctagactgtggagt 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_d14.g1 MSMg01no481_d14.g1 CHROMAT_FILE:
MSMg01no481_d14.g1 PHD_FILE: MSMg01no481_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:47 2005
(291 letters)
>mm_chr3_35147198_35147888
Length = 691
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Plus
Query: 1 ctacaaaatgcaaggataatgggacagagagcaaaaaagggttagctgtaaagttattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacaaaatgcaaggataatgggacagagagcaaaaaagggttagctgtaaagttattag 260
Query: 61 aaacaaatgccctctggatttgaatcttgtctctgtcacttccagatcggtgacctaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaatgccctctggatttgaatcttgtctctgtcacttccagatcggtgacctaagt 320
Query: 121 taatgttaatatctctgatccttggtcttcttatatgataaaaaccttggactattttga 180
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 321 taatgttaatatctctgatccttggttttcttatatgagaaaaaccttggactattttga 380
Query: 181 ggattctattgactgacagattacaaactcctaataaatggcagctaatagtaatatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggattctattgactgacagattacaaactcctaataaatggcagctaatagtaatatgga 440
Query: 241 gtcttgattgaaatggaagtacttggtactatccttcttgggcctacaggg 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttgattgaaatggaagtacttggtactatccttcttgggcctacaggg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
