BAC Information

Click to search

BAC

Clone NameMSMg01-481G21
Chromosome3 (Build37)
Map Location 4,359,690 - 4,360,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481G21.T7 (MSMg01no481_g21.b1)MSMg01-481G21.TJ (MSMg01no481_g21.g1)
ACCAG561838AG561839
length773774
length of high quality
(start - end)		594 (46 - 639)524 (74 - 597)
definitionCHROMAT_FILE: MSMg01no481_g21.b1 PHD_FILE: MSMg01no481_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:04 2005CHROMAT_FILE: MSMg01no481_g21.g1 PHD_FILE: MSMg01no481_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAACCAACTTCAATGCATAGATCACCTATCATATATTAGGCACTA
TGAATAACACCAGGGACACCAGTATAGAAGTCTGAATATAGACAATGAGG
ATCAAGCATGGTGCATATACAGATGTGAATAAGAACTTTTTCTGAATAAT
TTAGAGTTTCCGTAAACCAGAGGGTGAATTTGTGAGGGCTGATTTTTTGT
GATCTAGAAGACACCACTAACTGTACTGTACACTGAAAGTACTAGGAACA
TTTAAACATTTTATCAAAGATAAATATAAATAAATCAAATTCTTTAATTA
TTTATAATTCTAGTGCTTTGATGTTGTTTTCAAATAAAAGTGGGCCAAAG
CGATAGTTCAAAATTAAGAATATATTAAACTAGGAATATAAAGGCCTATG
TCCACAGCTATAAACTGTTTTCTCTTTTCGAGACTTAAAAACATCTTTTT
GCAACTTAAAGTATTTGTTATATCCTTTGGCATGACATAATTAAGACATA
TATTTTAGGACAAATATCAGGAGATGTTAAGTTCAATAGAAATGTCTATA
CTGCTTAAACAATGGAAGTATCAGGTAAGTAACAACATTTAGACAGCAAG
TCAATATGACTATGAAAGGTCTCCAATAATGAGCAAATTCAGACCAATAT
ACAGTTTGAGGATCTGGGCTTCTTATTGACAAAGTTGCTTTCCATCACCC
TGGATCTATTACATATCAGTCAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCACCAACAGCTCAATAAAAAATGT
AAGTCAATTCCAGAACTGGAGCGCCATATTGTTATAATACAGTTGTGACT
CTTTCCCCCATTATTTGGCAATTTGCTTTAGATTGCCTTTTTAGGAAGTT
TCTATTGTATTAGGTGTCCGTGTTACCCATCATGTGGCTGGTAATTTTAA
CTGTCTTTTTATGTTTCCTCCCCCAATTTTCTCTCTCTTCTCTTTCTTCA
CTTAATTCTCCAACTTAAGCACTGTCCCACCCATTCAATCTCTTGTATTT
CTCTTTGCATAATGATATCTATTTCTTCTCCCTAGTCCCTTACCCTCTAC
CTACTCTTGGAGGTTGTATGAGTTGTAGCTTGGTTATTATGGACTTTACA
GCTAATATCGATAGATAAGTGAATATATTTCATTTTTGCCTTTTAAAGTC
TTTAATACCTCTTTCAGATTTTTCATATTTCTATGTTTAACTTAAAATTT
CAGGATGTCATTTATTTACTTTTTAAGCATTAAGTAATATTTGAATGTTA
AATGTACCATATTTCTTTACTCTTCTATTGAGGAACATCTAGATTGGTTT
CAATTCCTGTCTATCATTAGTAGAACAGCAGTGAACACAGNTTTGTTAGT
GTCCCTGTGGTANGAATGAGCATCCTTTGTTTATAGGTTCATGAGTGTTA
TAGATGGATCTTGAAGTATATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_g21.b1 MSMg01no481_g21.b1 CHROMAT_FILE:
MSMg01no481_g21.b1 PHD_FILE: MSMg01no481_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:04 2005
         (594 letters)



>mm_chr3_4359176_4360169
          Length = 994

 Score =  913 bits (472), Expect = 0.0
 Identities = 478/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 115 ggtgcatatacagatgtgaataagaactttttctgaataatttagagtttccgtaaacca 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ggtgcatatacagatgtgaataagaactttttctgaataatttagagtttccgtaaacca 935

                                                                       
Query: 175 gagggtgaatttgtgagggctgattttttgtgatctagaagacaccactaactgtactgt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gagggtgaatttgtgagggctgattttttgtgatctagaagacaccactaactgtactgt 875

                                                                       
Query: 235 acactgaaagtactaggaacatttaaacattttatcaaagataaatataaataaatcaaa 294
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 874 acactgaaagtactaggaacatgtaaacattttatcaaagataaatataaataaatcaaa 815

                                                                       
Query: 295 ttctttaattatttataattctagtgctttgatgttgttttcaaataaaagtgggccaaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ttctttaattatttataattctagtgctttgatgttgttttcaaataaaagtgggccaaa 755

                                                                       
Query: 355 gcgatagttcaaaattaagaatatattaaactaggaatataaaggcctatgtccacagct 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gcgatagttcaaaattaagaatatattaaactaggaatataaaggcctatgtccacagct 695

                                                                       
Query: 415 ataaactgttttctcttttcgagacttaaaaacatctttttgcaacttaaagtatttgtt 474
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ataaactcttttctcttttcgagacttaaaaacatctttttgcaacttaaagtatttgtt 635

                                                                       
Query: 475 atatcctttggcatgacataattaagacatatattttaggacaaatatcaggagatgtta 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atatcctttggcatgacataattaagacatatattttaggacaaatatcaggagatgtta 575

                                                                       
Query: 535 agttcaatagaaatgtctatactgcttaaacaatggaagtatcaggtaagtaacaacatt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agttcaatagaaatgtctatactgcttaaacaatggaagtatcaggtaagtaacaacatt 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |