Query= MSMg01no481_k16.b1 MSMg01no481_k16.b1 CHROMAT_FILE:
MSMg01no481_k16.b1 PHD_FILE: MSMg01no481_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:22 2005
(657 letters)
>mm_chr3_74312809_74313865
Length = 1057
Score = 1210 bits (626), Expect = 0.0
Identities = 650/658 (98%), Gaps = 1/658 (0%)
Strand = Plus / Plus
Query: 1 attttctatagcccattgggacatttttagtaatctggactaatcactcactttttgtgg 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 attttctctagcccattgggacatttttagtaatctggactaatcactcactttttgtgg 259
Query: 61 ggtatttttgttgatattgttattgcgtttttaaaatttttattaggtattttcttcatt 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 260 ggtatttttgttgatattgttattgcgttttaaaaatttttattaggtattttcttcatt 319
Query: 121 tacatttccaatgctaccccaaaagtcccccatacctcctgcccactcccatacccaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacatttccaatgctaccccaaaagtcccccatacctcctgcccactcccatacccaccc 379
Query: 181 actctcacttcttggccctggcattcccctgtactgaggcatataaagtttgcaagccca 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actctcacttcttgggcctggcattcccctgtactgaggcatataaagtttgcaagccca 439
Query: 241 atgggcctctctttccactgatggtcaactaggccatcttctgatacatatgcatctaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgggcctctctttccactgatggtcaactaggccatcttctgatacatatgcatctaga 499
Query: 301 gacacgagctctggggggtactggttagttcatattgttgttccacatatagggttgcag 360
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 500 gacaagagctctggggggtactggttagttcatattgttgttccacgtatagggttgcag 559
Query: 361 agccttttagctccttgggtttttt-atataatttttatttaatgctctttatttgtctt 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 agccttttagctccttgggtttttttatataatttttatttaatgctctttatttgtctt 619
Query: 420 gtgtagggggcgtaagtatttgtgtcttcacgtattgagactttaaagacaaattaagga 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgtagggggcgtaaatatttgtgtcttcacgtattgagactttaaagacaaattaagga 679
Query: 480 gatttatcctcttctcctattatgtatatccaggaatttgtctccagtcataagaatttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gatttatcctcttctcctattatgtatatccaggaatttgtctccagtcataagaatttg 739
Query: 540 tggcaaatgactttcccaacagagctctgtcactagtctatattaatattcttatgacaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tggcaaatgactttcccaacagagctctgtcactagtctatattaatattcttatgacaa 799
Query: 600 taatttaagttaaaattatagtaagtttctctttgaaattatgtacgtgcaaatgaac 657
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 800 taatttaagttaaaattatagtaagtttctctttgaaattatgtacctgcaaatgaac 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_k16.g1 MSMg01no481_k16.g1 CHROMAT_FILE:
MSMg01no481_k16.g1 PHD_FILE: MSMg01no481_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:22 2005
(505 letters)
>mm_chr3_74457388_74458292
Length = 905
Score = 944 bits (488), Expect = 0.0
Identities = 501/506 (99%), Gaps = 2/506 (0%)
Strand = Plus / Minus
Query: 1 tatattccttcaagaacgtgttgtttccaaaaatatctattcactggagcatctatttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tatattccttcaagaacgtgttgtttccaaaaatatctattcactggagcatctatttgt 602
Query: 61 aatacttacagcaacgagagggcttttgaaaggttctgacacctagagaagtatattttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatacttacagcaacgagagggcttttgaaaggttctgacacctagagaagtatattttt 542
Query: 121 ctttaaacagtcatggatattctactaggtcctaagtgtcaatattaatcataatatgta 180
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctataaacagtcatggatattctgctaggtcctaagtgtcaatattaatcataatatgta 482
Query: 181 agtttccactatatgttactgagttaagtcttagtgctttgactgtaaggcacaaacata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agtttccactatatgttactgagttaagtcttagtgctttgactgtaaggcacaaacata 422
Query: 241 ttttgtttgctgtttctaacaaaagtattatcagactgcttattagaaatgtggaatatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttgtttgctgtttctaacaaaagtattatcagactgcttattagaaatgtggaatatt 362
Query: 301 gaattagcatacattgtaaaattttgcatcttataaatatttccagatttttcagatatt 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaattatcatacattgtaaaattttgcatcttataaatatttccagatttttcagatatt 302
Query: 361 cattaattactggtaactgccttaactgtgggtcaagaaataataaggtgcctgccacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cattaattactggtaactgccttaactgtgggtcaagaaataataaggtgcctgccacat 242
Query: 421 gtctcagcaggagagtcacaaaaatcattaaagagaattattgtttgtgtgtgtgtgtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtctcagcaggagagtcacaaaaatcattaaagagaattattgtttgtgtgtgtgtgtgt 182
Query: 481 gtgtgtgtgtgtgtgtgt--gtgtgt 504
|||||||||||||||||| ||||||
Sbjct: 181 gtgtgtgtgtgtgtgtgtaggtgtgt 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
