Query= MSMg01no482_c20.b1 MSMg01no482_c20.b1 CHROMAT_FILE:
MSMg01no482_c20.b1 PHD_FILE: MSMg01no482_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:02 2005
(567 letters)
>mm_chr3_143468876_143469842
Length = 967
Score = 542 bits (280), Expect = e-158
Identities = 298/304 (98%), Gaps = 2/304 (0%)
Strand = Plus / Plus
Query: 263 ctctctggtttttttgagacagggtttctcttataccctctgttttcattatttgcaagt 322
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctctctggtttttctgagacagggtttctcttataccctctgttttcattatttgcaagt 522
Query: 323 aaacatcacaagcttcaagaatccttcaaaagttcccttcaagaatgcatctccttcctt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaacatcacaagcttcaagaatccttcaaaagttcccttcaagaatgcatctccttcctt 582
Query: 383 cctttctctgccccaccttagcactatcctacaacagtttgaatattctctccgaatatc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cctttctctgccccaccttagcactatcctacaacagtttgaatattctctccgaatatc 642
Query: 443 tttttaaaccagaaaaaaacttaacaccacttcatgaaaaagaccagtgaggaggacaca 502
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 643 tttttaaaccagaaaaaaacttaacaccacttcatgaaaaagaccaatgaggaggaaaca 702
Query: 503 gaatgtttgtatgatgagc-tgttggcttcgggttctcccttttgtagtttatcaagttg 561
|||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 703 gaatgtttgtatgatg-gcctgttggcttcgggttctcccttttgtagtttatcgagttg 761
Query: 562 ccta 565
||||
Sbjct: 762 ccta 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_c20.g1 MSMg01no482_c20.g1 CHROMAT_FILE:
MSMg01no482_c20.g1 PHD_FILE: MSMg01no482_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:02 2005
(538 letters)
>mm_chr3_143613843_143614780
Length = 938
Score = 994 bits (514), Expect = 0.0
Identities = 532/538 (98%)
Strand = Plus / Minus
Query: 1 caagatggcagcattgaaagattaaagtacatgaagggcaggtataggtgtcctatctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 caagatggcagcattgaaagattaaagtacatgaagggcaggtataggtgtcctatctta 804
Query: 61 gtctttttctttctttgtttgcttgcttctttctttttcctttctcttctcttcctcctc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtctttttctttctttgcttgcttgcttctttctttttcctttctcttctcttcctcctc 744
Query: 121 ttcttagttattgtttagaattcttgaggtacagtgaggacctaacagttcctaaagcat 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 743 ttcttagttattgtttagaattcttgaggtacaatgaggacctaacagttcctaaagcat 684
Query: 181 caccgctgaacatcatttgacttacagattcgtttacatgtgaacattgtcattttggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caccgctgaacatcatttgacttacagattcgtttacatgtgaacattgtcattttggtg 624
Query: 241 gttttatattcttccttttacaatatacaaataagtctaactacccccgccccctcatac 300
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct: 623 gttttatattcttccttttacgatatacaaatatgcctaactacccccgccccctcatac 564
Query: 301 tgcatactaagaacaaataaaatgtttgagggaagagagcttttaaagattacagttttt 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcatattaagaacaaataaaatgtttgagggaagagagcttttaaagattacagttttt 504
Query: 361 cacatctgtttttaaatggcatcctcagaatagtcccatgaaataataagactaaaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cacatctgtttttaaatggcatcctcagaatagtcccatgaaataataagactaaaacat 444
Query: 421 ctccatattctgggactttgtcatctcagtctttgtggttgattttcttgaatctacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctccatattctgggactttgtcatctcagtctttgtggttgattttcttgaatctacaca 384
Query: 481 ggtcttttctgatggaataaggattggcacttggccctcttgacatttaattctcacc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggtcttttctgatggaataaggattggcacttggccctcttgacatttaattctcacc 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
