BAC Information

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BAC

Clone NameMSMg01-482I07
Chromosome3 (Build37)
Map Location 63,976,702 - 63,977,042
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739
Downstream geneEG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482I07.T7 (MSMg01no482_i07.b1)MSMg01-482I07.TJ (MSMg01no482_i07.g1)
ACCAG562665AG562666
length679680
length of high quality
(start - end)
579 (52 - 630)342 (314 - 655)
definitionCHROMAT_FILE: MSMg01no482_i07.b1 PHD_FILE: MSMg01no482_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:27 2005CHROMAT_FILE: MSMg01no482_i07.g1 PHD_FILE: MSMg01no482_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATACCACTCACTTCAAAAGAGGATCCGCGGAATTCCTATTGCCATTCT
TTTTAATGGCTGTGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGT
ATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCAAGCTTCTGGCTAT
TATAAATAAGGTTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGG
TTGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCAGGATCCTCC
AGTAGTACTATATCCACTTTTCTGAGGAACCGCCAGACTGATTTTTTTAA
TGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTT
CTCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCC
ATTCTGAATGGTGTGAGGTGAAATCTCAGGGTTGTTTTGATTTGCATTTC
CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCAGCCATTC
AGTATTCCTCAGGTGAGAATTCTTTGTTTTGCTCTGAGCCCCATTTTTTT
AATGGGGTTATTTGATTTTCTGGATGCCACCTTCTTGAGTTCTTTATATA
TATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCT
CAATCTGTTGGTGGCCTTTTTGTCCTATG
CCTGGCGGCCGCCCGGCTTTCGTATCAGGGTNGAACNANAGAAGGATCCC
AATAATCCCGAGAGAAATGGAATATCAATTACAATCTCTTGGTCTATTAC
ACCCCCACATGTACTAGAACAGTTTTCATGTGTAACTTTAGATTCTTAGA
GTCAAATTTTTATCTAAAATAGAGTCAGTCTAAACCTTTGTTTATGAAAC
ACATATGTATTGTTACAATTAAAACAAAAATAACTTCTTGTAAAAATGAT
TATAGCCCAATTTATGTTATATTATTCTTAGTAATCCATGGCTTACAAAA
TATTTCTATGGTCTTACAGCATTTAAATACATTTTCTTTTTGTGAATAAT
TCTAGGTAAGTTTTCTTTCACACAGAATCTAAGTAATTGTGGGTGGAATT
CCTTGCAGTGGGTGAGCATTTAAGTGGACATTCAAGGGGTATTGGAGAAC
AGATTAGAATTAATTTCAGCAGATTGAATCAAAATAGTGTGGTTGTTATC
TTGAGAAATAATGTGAAGATTAACCACATGAAAAACAAAATAGTAAAACA
TCTTTATTAGGGCTGACCAAATATATGCAGTATGTATTTTTTTGTTTTCT
GTCCTGTCCTGTCATTTCCTGTCCTGTATGTCCTGTTCTGTCTGTTCTGT
TCTGCTCTGATCTGTTCCGCTCTGTTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_i07.g1 MSMg01no482_i07.g1 CHROMAT_FILE:
MSMg01no482_i07.g1 PHD_FILE: MSMg01no482_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:27 2005
         (342 letters)



>mm_chr3_63976558_63977299
          Length = 742

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacagcatttaaatacattttctttttgtgaataattctaggtaagttttctttcacac 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 485 ttacagcatttaaatacattttctttttgtgaaaaattctaggtaagttttctttcacac 426

                                                                       
Query: 61  agaatctaagtaattgtgggtggaattccttgcagtgggtgagcatttaagtggacattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agaatctaagtaattgtgggtggaattccttgcagtgggtgagcatttaagtggacattc 366

                                                                       
Query: 121 aaggggtattggagaacagattagaattaatttcagcagattgaatcaaaatagtgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaggggtattggagaacagattagaattaatttcagcagattgaatcaaaatagtgtggt 306

                                                                       
Query: 181 tgttatcttgagaaataatgtgaagattaaccacatgaaaaacaaaatagtaaaacatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgttatcttgagaaataatgtgaagattaaccacatgaaaaacaaaatagtaaaacatct 246

                                                                       
Query: 241 ttattagggctgaccaaatatatgcagtatgtatttttttgttttctgtcctgtcctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttattagggctgaccaaatatatgcagtatgtatttttttgttttctgtcctgtcctgtc 186

                                                    
Query: 301 atttcctgtcctgtatgtcctgttctgtctgttctgttctg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atttcctgtcctgtatgtcctgttctgtctgttctgttctg 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)