BAC Information

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BAC

Clone NameMSMg01-482I17
Chromosome3 (Build37)
Map Location 159,061,325 - 159,061,675
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc7, LOC100041008, LOC668905
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482I17.T7 (MSMg01no482_i17.b1)MSMg01-482I17.TJ (MSMg01no482_i17.g1)
ACCAG562685AG562686
length749747
length of high quality
(start - end)
343 (69 - 411)641 (75 - 715)
definitionCHROMAT_FILE: MSMg01no482_i17.b1 PHD_FILE: MSMg01no482_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:29 2005CHROMAT_FILE: MSMg01no482_i17.g1 PHD_FILE: MSMg01no482_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAAATATAAACCATCTGATTGTAGGTCATCCCCATAGTTTGAGT
CTATGTAAAAAAATTGTTATTACTGTGATATTTCATCACTGTGTATAAAG
CACTGGGATGAGATGTAGCATACAATAAGCACTGTATGAATGTCATTCGT
ATCAGAAAATCCTCTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAA
GAAGTGGGAGTGGGTGAGTAGAGGAGTAGGCGAGGGGGGGTGGTAATTGG
GAACTTTCAGGATAGCATTTTAAATGTAAATAAAGAAAATATCTAAGAAA
AGAAAAGAAGAGAAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAG
AGGAGAGGAGATTATACGTTTTTTTTTTTTTTTGTTTTTGTTTGTTTTTT
GNTTGTGTTGGTGGTTGGTTTTGGTTTGTTGATTGGGTTGTTTGTTTTTC
TGTTTTTTTCTTCCATCATCCCCCTCCTCCCCCTCCCCTCCCTTCCTCCC
CTCCTCCACCATTTTTTCTTTTCCTTTTCCCGTTTCCTTCCCCTTTCCCT
TTCCCCTCCCCCTCCCTTTGCCTACTCTTCTCTTCTCCCACTACTCCCCC
CCCACTATTTTGTTCCTCTCCCCCTCCTTCCTAACTATTCCGCGCTCCTC
CCCCCCCTCTTCCCCTCTCATTCTTCCTCCTACCCTCTCCCCTTTTTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTTATAAATTTACTTTACATCTCT
ATCCCAGCCCTCTACCCCATACCAGTCCTTTGTCACATGGTCCCTTCAAC
TTAAACTCCTTCCCTCTCCTCTGTGAAAGTGAAGGTTCTCACTGGGTACA
CACCCACCCTGGCACCTCAAGTCACTGCAGGAATAGACACATTCTCTCAC
TGAGGCCAGACAAGACAGTCCAGTTAGGGGAACAGGATTCACAGGCAAGC
AAGAGAGTCAGGGTAAGCCCCCATGCCAGTTGTTAGGAGACCTTTATGAA
GATAAAGCTGCATATCTGCTACATATGTGCAGGGACCCTAGGTCCAGCCC
TTGTATGTTCTTTGGTTGGTGGTTCGGAGAGCACCCAGAGTCCAGGTTAG
TTGGCACTGTTGGTCTTTCTGTAGAGTTCTAACTCCTTTCGGGCCTGTGA
TTCTTCCCCCAATGCTCTCCAAATTCCATCCAATGTTTGGCTGTAGTTCT
CTGCATCTGTTTCAGTCAGATTCTGGGTGCAGCCTCTTAAAGGACAGCCC
TGCTAGGCTCCTGTCTGAAAGCATAACAGAGTATCATTGATAGTGTCAGG
GATTGGTTCTGGCCCATGGGATGGGTCTCAAGTTGGGCCAGTCATTGGTT
GGCCATTTCCTCAGNTCCAGCTCCATCTTTGTCCCAGCTACAGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_i17.b1 MSMg01no482_i17.b1 CHROMAT_FILE:
MSMg01no482_i17.b1 PHD_FILE: MSMg01no482_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:29 2005
         (343 letters)



>mm_chr3_159061125_159061870
          Length = 746

 Score =  551 bits (285), Expect = e-161
 Identities = 333/351 (94%), Gaps = 8/351 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgattgtaggtcatccccatagtttgagtctatgtaaaaaaa-ttgttattactgtg 59
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atctgattgtaggtcatccccatagtttgagtctatgtaaaaaaaattgttattactgtg 260

                                                                       
Query: 60  atatttcatcactgtgt--ataaagcactgggatgagatgtagcatacaataagcactgt 117
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttcatcactgtgtgtataaagcactgggatgagatgtagcatacaataagcactgt 320

                                                                       
Query: 118 atgaatgtcattcgtatcagaaaatcctctttatatgccccagtacaggggaacgccagg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaatgtcattcgtatcagaaaatcctctttatatgccccagtacaggggaacgccagg 380

                                                                       
Query: 178 gccaagaagtgggagtgggtgagtagaggagtaggcgagggggggtggtaattgggaact 237
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gccaagaagtgggagtgggtgagtagaggagtaggcaagggggggtggtaattgggaact 440

                                                                       
Query: 238 ttcaggatagcattttaaatgtaaataaagaaaatatctaagaa---aaga-aa-agaag 292
           ||||||||||||||| |||||||||||||||||||| |||||||   |||| || |||||
Sbjct: 441 ttcaggatagcatttgaaatgtaaataaagaaaatacctaagaagagaagagaagagaag 500

                                                              
Query: 293 agaagaggagaggagaggagaggagaggagaggagaggagaggagaggaga 343
           ||||||| |||| |||| |||| |||| |||| |||| |||||||||||||
Sbjct: 501 agaagagaagagaagagaagagaagagaagagaagagaagaggagaggaga 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 746
Length adjustment: 9
Effective length of query: 334
Effective length of database: 737
Effective search space:   246158
Effective search space used:   246158
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)