NNCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAATTTCCGAAACCAAATAGCTGAGAAGTACCTGAAAAAATG
TTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCCAAGATAAAAAATTCAGGGGGCAGC
AGATGCTGGCAGGGATGTGGACAAAGAGGAGCACTCCTCCATTGCTGGTG
GAATTGCAAGCTTGTACAAACACTCTGTAAATCAGTCTCATGTTTCCTCA
GAAAATTGAACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATACCAGAAGATGTTCCTTCACTATGTTCAAAGAAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGTCTGTCAACAGCGGAATGGATA
CAGAAAATGTGGTACATTTACACAATGGAGTACTACACAACTATTAAAAA
CAATGAATTTATGAAATTCTTAGGCAAATGGATGTATCTGGAGGATATCA
TCCTGAGTGAGGTAACCCAGTCACAAAATAACTCATATGATATGCACTCA
CTGATAAGTGGATATTAGCCCAGAAACTTAGAGTATCCAAGATACAATTT
GCAAAACACATGAAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTC
ATTCCTCCTCTAGAATGGGAACAAAATAGCCATGGAAGGACTCACAGAAA
ACAAGTTTGGAGCAAAGATGGAAGGAAGGACCATCTAA

NNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATATTTCTTGTTTTAGGCT
ACAGGATGAAGATCTTTTATCACTTGCTATGTATCCCAACAAGAACCTAC
ATAAGATAAATTATCATATAGTAAATATTGACTATAGTTCTCTATTTGGC
GTTATCTAGTAGTTTCTTGATCTTTTGAGAAATATTATTATTTGATACTA
TACTAGGATTATAATTTTAAAATGTAGGAATGAAGAGTGAAAAGAATGTG
ACCCACCCATAAATGTTTAAATTTTATTTGGAATGAATCTACTAACAATT
ATGAGTTAATAGGGTCACACAGGTGTTTCTGACATGGAGTGGTGGTAAAA
GAATGACAAATATAATCAATTTGGTGCCATCAGGTATGCTTTAAGTGATA
ACAGCCCTCATATAATGAGGGTTAAACTGAACTATTTCAGACAGAAAGAT
GAAAGGATAGGTGGACTATAAGCAGAAGAAAATCTAGGAATTATAAATAC
TTTCAATTTTATTTTTTAAAGTTCATTTTAGTATTTTAATTGCATGTGGC
AGGGAATTTATACCTGAATATCAGTACATGAGAAACATAGAAGATGGTAT
GGAATCCCCTGTAGCTAGAGTTACAAGCAGTTTTGTGTTGGTTGCTGGGA
ACAGAGTCATGTCTTCAACAAAATGGTGGCTGCTCTTAATGGCTAAACCA
TCTCCCAGTTCATCAAACTTCTTTAGTACCAACAGAA

Query= MSMg01no483_a21.g1 MSMg01no483_a21.g1 CHROMAT_FILE:
MSMg01no483_a21.g1 PHD_FILE: MSMg01no483_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:07 2005
         (596 letters)



>mm_chr3_6787860_6788852
          Length = 993

 Score = 1098 bits (568), Expect = 0.0
 Identities = 588/596 (98%), Gaps = 3/596 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatatttcttgttttaggctacaggatgaagatcttttatcacttgctatgtatcccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatatttcttgttttaggctacaggatgaagatcttttatcacttgctatgtatcccaa 260

                                                                       
Query: 61  caagaacctacataagataaattatcatatagtaaatattgactatagttctctatttgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 caagaacctacataagataaattatcatatagtaaatattgactatagttctctatatgg 320

                                                                       
Query: 121 cgttatctagtagtttcttgatcttttgagaaatattattatttgatactatactaggat 180
           |||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||
Sbjct: 321 cgttatctagtagtttcttgatcttttgagaaa---tattatttgataccatactaggat 377

                                                                       
Query: 181 tataattttaaaatgtaggaatgaagagtgaaaagaatgtgacccacccataaatgttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tataattttaaaatgtaggaatgaagagtgaaaagaatgtgacccacccataaatgttta 437

                                                                       
Query: 241 aattttatttggaatgaatctactaacaattatgagttaatagggtcacacaggtgtttc 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 438 aattttatttggaatgaatctactaacaattttgagttaatagggtcacacaggtgtttc 497

                                                                       
Query: 301 tgacatggagtggtggtaaaagaatgacaaatataatcaatttggtgccatcaggtatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgacatggagtggtggtaaaagaatgacaaatataatcaatttggtgccatcaggtatgc 557

                                                                       
Query: 361 tttaagtgataacagccctcatataatgagggttaaactgaactatttcagacagaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttaagtgataacagccctcatataatgagggttaaactgaactatttcagacagaaaga 617

                                                                       
Query: 421 tgaaaggataggtggactataagcagaagaaaatctaggaattataaatactttcaattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgaaaggataggtggactataagcagaagaaaatctaggaattataaatactttcaattt 677

                                                                       
Query: 481 tattttttaaagttcattttagtattttaattgcatgtggcagggaatttatacctgaat 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 678 tattttttaaagttcattttagtattttaattgcatgtggcagggaatttatacctgagt 737

                                                                   
Query: 541 atcagtacatgagaaacatagaagatggtatggaatcccctgtagctagagttaca 596
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atcagtatatgagaaacatagaagatggtatggaatcccctgtagctagagttaca 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 993
Length adjustment: 10
Effective length of query: 586
Effective length of database: 983
Effective search space:   576038
Effective search space used:   576038
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)