Query= MSMg01no483_d07.b1 MSMg01no483_d07.b1 CHROMAT_FILE:
MSMg01no483_d07.b1 PHD_FILE: MSMg01no483_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:19 2005
(635 letters)
>mm_chr3_54551480_54552510
Length = 1031
Score = 1185 bits (613), Expect = 0.0
Identities = 625/631 (99%), Gaps = 4/631 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgtaatctacagaaaagttctcttccactgtagcttcaaaattaaaatgtgta 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtaaactacagaaaagttctcttccactgtagcttcaaaattaaaatgtgta 264
Query: 65 tgtgtgtctgtctgtctgtgtgttttaaaacctttatttcctagattatcattggtgaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtgtctgtctgtctgtgtgttttaaaacctttatttcctagattatcattggtgaaa 324
Query: 125 tataaagtaggtagtcttcaggtgcaggtgtctgtctgtccttctagccctgtactgtca 184
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tataaagtaggtagtcttcaggtgcaggtgtctgtc----cttctagccctgtactgtca 380
Query: 185 ccgtcagttcccaaaggcttccccagcattccaaatccccgaccctggctgtggccaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtcagttcccaaaggcttccccagcattccaaatccccgaccctggctgtggccaagt 440
Query: 245 ctccttggctcttgctacctggttttgttttcatgcctaacgtggtggatccacaggtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccttggctcttgctacctggttttgttttcatgcctaacgtggtggatccacaggtct 500
Query: 305 agttctaggcgaaaggatggatccaagctaggcatggctgtaaccatgtgtgttggggca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttctaggcgaaaggatggatccaagctaggcatggctgtaaccatgtgtgttggggca 560
Query: 365 gagtgaccctgtgggtatacctgtcacaaccagagccttccaggataggcttccatagct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagtgaccctgtgggtatacctgtcacaaccagagccttccaggataggcttccatagct 620
Query: 425 gccagggctaccctgttccagacaggacagggaggggacagggacctttaatcagaaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccagggctaccctgttccagacaggacagggaggggacagggacctttaatcagaaaaa 680
Query: 485 cacccagggtccctggctgagaggagagagtggagaagcagctgtgagtgagcagagagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacccagggtccctggctgagaggagagagtggagaagcagctgtgagtgagcagagagc 740
Query: 545 cccttgagggaccctttgttatgtatggtgaggtgggtgaacacacaaggccggcttcgt 604
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 cccttgagggaccctttgttatgtatggtgaggtgggtgaacacacaaggccagcttcgt 800
Query: 605 ctgagggtttctgagtggtggctgaaggtca 635
|||||||||||||||||||||||||||||||
Sbjct: 801 ctgagggtttctgagtggtggctgaaggtca 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1031
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1021
Effective search space: 638125
Effective search space used: 638125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_d07.g1 MSMg01no483_d07.g1 CHROMAT_FILE:
MSMg01no483_d07.g1 PHD_FILE: MSMg01no483_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:19 2005
(597 letters)
>mm_chr3_54602601_54603596
Length = 996
Score = 1091 bits (564), Expect = 0.0
Identities = 585/592 (98%), Gaps = 1/592 (0%)
Strand = Plus / Minus
Query: 1 acagggatccacctgcctctgtctccctgctgctgagatcaaaggcaggtaccacggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 acagggatccacctgcctctgtctccctgctgctgagatcaaaggcaggtaccacggtac 787
Query: 61 cactacaccctgaagcttctactcctgaatagtttcttacaactacagattgccagggat 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 cactacaccctgaagctcctactcctgaatagtttcttacaactacagattgccagggat 727
Query: 121 atttggccacttgtgaggcgatcaaaggggcggtgggaaatctgggacaatgctttgtgt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atttggccacttgtgaggagatcaaaggggcggtgggaaatctgggacaatgctttgtgt 667
Query: 181 ccttagatgggtacacatggcttttccaaggaagaaaccaggagaaatatcagaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccttagatgggtacacatggcttttccaaggaagaaaccaggagaaatatcagaaaaaaa 607
Query: 241 tagggattccaggaggtggggtggctaggaatggaagtagttatgtaaagataaattact 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 606 tagggattccaggaggtggggtggctaggaatggaagtagttatgaaaagataaattact 547
Query: 301 caagtgttctgaggagacataaaatcccaatatagttattacaatagagttcttaactat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caagtgttctgaggagacataaaatcccaatatagttattacaatagagttcttaactat 487
Query: 361 tgttcagaactcgattatgttatttttcgagcccaagaagattcacatgtgtggggtttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgttcagaactcgattatgttatttttcgagcccaagaagattcacatgtgtggggtttt 427
Query: 421 taaagttctgagacctgatgtctgtgcaaatggtttaccattagatgtctggcgttatgg 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 426 taaagttctgagacctgatgtctgtgcaaatggtttaccgttagatgtctggcgttatgg 367
Query: 481 aggtggggactgcctctaatgtgcgtttgagtccctggtacctgacactgtacccagtac 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 366 aggtggggactgcctctaatgtgcgtttgattccctggtacctgacactgtacccagtac 307
Query: 541 acacaaatgcacaagacagacttaatgaattgacatgcttggggtttttttt 592
|||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 306 acacaaatgcacaagacagacttaatgaatcgacatgcttggg-tttttttt 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
