NAAGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATATACAGAGAAGTAGACCACTTCTAAGAAATAGCT
TAAATAGGTTAAATAATTTTATATATGTTGTTTTTGACAGGCTCTTGATT
TGGAGTGTAAAGTATATTGCTACAATATAAATAAACTAAAATCATTAATA
CACTATGTCTGAAAATATAAATATATTTACATAAGCCTATAAACTTTTTG
AAACTGAAAGAAATGTCATGGGTTTCAGAGAGAGAGAGAGAGCTCACAGT
AGGAAAAAATGGAAGCAAGACTAAGGAGATGGAATGAGTGCAAACGAGGT
ACATATTGACATGAAATACAAGAGAAGACTGCAAAAGTAGAAGAAAAGTA
ATGTTGAAGACATCTATAAGCTAATGGTCACCATTTAAAGAGAGAAACTC
ACTGAATGGACTGTGAGGATTGACAATTTGGATAGAAAATATTATTGGAT
TTTTTTAGAAGTTTCTGGAGTTTGATCGGCAGTAAACCAAATAAGTAACA
GAGTTGTTCCTGAACTATAAAATCAATTTGTTTTATTAGAATATACTACT
GGATGGGGGCATTGTTAGATATAATGCAGAGGGATAAATAAGCAGTAAGA
GTGGGTGATGAAGGAATTATAAAAGGGGACTTTCTTTTTCCTCCCCACAA
AAGGGGACTTTCTATGAAGTCAAGGAAACTGGTCCCACAGCN

AAAAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGTACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TTTGGAAATCTGTCTGGCGGTTCCTCAGAAAATTGGACATAGAACTACAG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCTTAGGCAAATGAATGGACCTGGAGGGCATCA
TCCTGAGTGCGGTAACACATTCACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAGACCTAGGATACCCCAGATATAAGATA
AAATTTCCTAAACACATGAACTCAAGAAAATGAAGACTGGAGTGTGGACA
CTATGCCCCTCCT

Query= MSMg01no483_e02.b1 MSMg01no483_e02.b1 CHROMAT_FILE:
MSMg01no483_e02.b1 PHD_FILE: MSMg01no483_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:24 2005
         (685 letters)



>mm_chr3_43550935_43552021
          Length = 1087

 Score = 1301 bits (673), Expect = 0.0
 Identities = 680/683 (99%), Gaps = 2/683 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatacagagaagtagaccacttctaagaaatagcttaaataggttaaataat 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataaacagagaagtagaccacttctaagaaatagcttaaataggttaaataat 264

                                                                       
Query: 65  tttatatatgttgtttttgacaggctcttgatttggagtgtaaagtatattgctacaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttatatatgttgtttttgacaggctcttgatttggagtgtaaagtatattgctacaata 324

                                                                       
Query: 125 taaataaactaaaatcattaatacactatgtctgaaaatataaatatatttacataagcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaataaactaaaatcattaatacactatgtctgaaaatataaatatatttacataagcc 384

                                                                       
Query: 185 tataaactttttgaaactgaaagaaatgtcatgggtttcagagagagagagagag--ctc 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 385 tataaactttttgaaactgaaagaaatgtcatgggtttcagagagagagagagagagctc 444

                                                                       
Query: 243 acagtaggaaaaaatggaagcaagactaaggagatggaatgagtgcaaacgaggtacata 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagtaggaaaaaatggaagcaagactaaggagatggaatgagtgcaaacgaggtacata 504

                                                                       
Query: 303 ttgacatgaaatacaagagaagactgcaaaagtagaagaaaagtaatgttgaagacatct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgacatgaaatacaagagaagactgcaaaagtagaagaaaagtaatgttgaagacatct 564

                                                                       
Query: 363 ataagctaatggtcaccatttaaagagagaaactcactgaatggactgtgaggattgaca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataagctaatggtcaccatttaaagagagaaactcactgaatggactgtgaggattgaca 624

                                                                       
Query: 423 atttggatagaaaatattattggatttttttagaagtttctggagtttgatcggcagtaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttggatagaaaatattattggatttttttagaagtttctggagtttgatcggcagtaa 684

                                                                       
Query: 483 accaaataagtaacagagttgttcctgaactataaaatcaatttgttttattagaatata 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accaaataagtaacagagttgttcctgaactataaaatcaatttgttttattagaatata 744

                                                                       
Query: 543 ctactggatgggggcattgttagatataatgcagagggataaataagcagtaagagtggg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctactggatgggggcattgttagatataatgcagagggataaataagcagtaagagtggg 804

                                                                       
Query: 603 tgatgaaggaattataaaaggggactttctttttcctccccacaaaaggggactttctat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgatgaaggaattataaaaggggactttctttttcctccccacaaaaggggactttctat 864

                                  
Query: 663 gaagtcaaggaaactggtcccac 685
           |||||||||||||||||||||||
Sbjct: 865 gaagtcaaggaaactggtcccac 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1087
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1077
Effective search space:   726975
Effective search space used:   726975
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)