GGTGATGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTATTTCCAAAGATAGTAGCTTTCTAAATGTTTTTTC
ATGCACAATTAGATGATTATATTCATTTTATTCTTCATTCATTTCTTAAC
AGGATAAATAGATAACATTACATGATTTTCATATTCTGCATTATCCTTCC
ATCCTTGGAATAAATCCTGTATGAGCATGGTGAAGAATTATTTTAATAAA
CCATTGAGGTTGCTTGGCTAGTGTTGCTCATGTATCCCACCCCTGAGCGT
TCTTATACCCATATTTATAAAGGATATTAACAAATAATCCTTTGCTTTTG
ATGTGTTGTTCTTTGTAATTACTATTGGGGTAATGTTGGTTTCATAACAG
GTGTTCGGAAGTTTACCCACCCATCAAATTTTTGGACAAATTTGAGAAAA
ATTAATAGTAACCCAAAATATTTTCTTGGTCTTCATGAAATCAGAAAATT
CTGAATACGTTTGTAGAGACTTTTTTTGAGATAAAACTATAATTACATCA
TTTCACTCTTTCCTTTCCTTCCCCCATCTCCCCTTTATTCCCTTACTGTT
CTCTTTCAAATTCATGGCCTCCTTTTTCATTAATTGTTATGGTATTCATG
TATGTATATAACTGTATATTTTAAGTATAACCAGCCTAGTCTATATAATG
CTATATGTATGGACATTTGCAGAGCTGACCATTTGAA

AAAAAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCACATGAATTTTAC
AGGTATGTTTCTTTTTAATACATGGTTTTCAAAGTCTAGCTTTTTCCATT
CAACAATTAAAATTTGATAATATCTGCCAGTAACAATAAAATCATTAATA
TGCCTGGATTAGGTTTCAGTTAAAATTTTTTATGAATAGATGAGAATAAG
TCTGGAAGTTCATTATAGAAGAACATGTTCCTGAATAGATTTCAATAAGT
AAATCCATAAGGAATTATGTAATATAAATTTACTATGTTTTATTTGCTTC
ATATATTATAATGAACTTTTAAAGATATTGATGTTTGGAACTGGAGAGTT
GGCTCAGCAATTAAGAACATTGGCTGCTATTCTGGAGTACCCAGAGTAGA
TACCCATACTGCACACTGTGACTCACACCTACCTGCAAGTTCAGTTCTTG
GGAACCAAACATCCTCTTTTGGCCAAAGTTGGCAACAGGTATACAAGTGG
TGCACAGATATTTGTAGGCAAAACACCCATACAGGTAAAATCAAAATTAA
ATCTAAACCAAATAATACAATGAAAAAGAATTTTGGTTACATAAGGAGAA
GTGAAAGAACCCTAAATCCTTTTTTTCCCTTTATTTTTCCCTTCAAAAAA
CTAAAAGAAATCTTTAAATTTTA

Query= MSMg01no483_k04.g1 MSMg01no483_k04.g1 CHROMAT_FILE:
MSMg01no483_k04.g1 PHD_FILE: MSMg01no483_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:54 2005
         (476 letters)



>mm_chr3_125452149_125453024
          Length = 876

 Score =  874 bits (452), Expect = 0.0
 Identities = 470/476 (98%), Gaps = 1/476 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcacatgaattttacaggtatgtttctttttaatacatggttttcaaagtctagcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attcacatgaattttacaggtatgtttctttttaatacatggttttcaaagtctagcttt 444

                                                                       
Query: 61  ttccattcaacaattaaaatttgataatatctgccagtaacaataaaatcattaatatgc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 ttccattcaacaattaaaatttgataatatctgccagtaataataaaatcattaatatgc 384

                                                                       
Query: 121 ctggattaggtttcagttaaaattttttatgaatagatgagaataagtctggaagttcat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 383 ctggattaggtttcagttaaaattttgtatgaatagatgagaataagtctggaagttcat 324

                                                                       
Query: 181 tatagaagaacatgttcctgaatagatttcaataagtaaatccataaggaattatgtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatagaagaacatgttcctgaatagatttcaataagtaaatccataaggaattatgtaat 264

                                                                       
Query: 241 ataaatttactatgttttatttgcttcatatattataatgaacttttaaagatattgatg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataaatttactctgttttatttgcttcatatattataatgaacttttaaagatattgatg 204

                                                                       
Query: 301 tttggaactggagagttggctcagcaattaagaacattggctgctattctggagtaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 203 tttggaactggagagttggctcagcaattaagaacattggctgctattctggaataccca 144

                                                                       
Query: 361 gagtagatacccatactgcacactgtgactcacacctacctgcaagttcagttcttggga 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gagtagatacccat-ctgcacactgtgactcacacctacctgcaagttcagttcttggga 85

                                                                   
Query: 421 accaaacatcctcttttggccaaagttggcaacaggtatacaagtggtgcacagat 476
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 84  accaaacatcctcttttggccaaagttggcaagaggtatacaagtggtgcacagat 29


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)