Query= MSMg01no483_k17.b1 MSMg01no483_k17.b1 CHROMAT_FILE:
MSMg01no483_k17.b1 PHD_FILE: MSMg01no483_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:57 2005
(686 letters)
>mm_chr3_82185180_82186266
Length = 1087
Score = 1112 bits (575), Expect = 0.0
Identities = 668/721 (92%), Gaps = 41/721 (5%)
Strand = Plus / Plus
Query: 5 tacttaaccattataggaaatcatttcagtcttgcaataaagaaagatgataaacatatg 64
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 169 tacttaaccattataggaaatcatttcagtcttacaataaagaaagatggtaaacatatg 228
Query: 65 atttt-cttttcttttcttttcttttcttttctttttt-gttttgttttgtttt---gtt 119
||||| |||| |||||||||| ||| |||| |||||| ||||||||||||||| |||
Sbjct: 229 atttttctttccttttctttt--tttgttttgtttttttgttttgttttgtttttttgtt 286
Query: 120 tt----tgttttgtttttgagacagggtttctct------------ctgt---------- 153
|| |||||||||||||||||||||||||||| ||||
Sbjct: 287 ttgttttgttttgtttttgagacagggtttctctgtgtagccctggctgtcctggaactc 346
Query: 154 -------agaccaggctggcctcgaactcagaaatccacctgcctctgtctcccaagtgc 206
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 347 actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccaagtgc 406
Query: 207 tgggattaaaggtgtgcgccaccactgcccagctaacatattatttttcttaaacagcaa 266
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 407 tgggattaaaggtgtgcgccaccactgcccagctaacatatgatttttcttaaacagcaa 466
Query: 267 tattcatcttcatgttttacagtattattggaaagagaatagtactttagataaaacata 326
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 467 tattcatcttcatgttttacagtattattggaaaaagaatactactttagataaaacata 526
Query: 327 ttaatttcgtggtggtttctttcaacaaatattttagaagaagataaaaattctaggtca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 527 ttaatttcgtggtggtttctttcaacaaatattttagaagaagataaaaattcaaggtca 586
Query: 387 tttggacaccttatagtgtcatataaccttttttt-ctttaatttcataggagtggttag 445
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 587 tttggacaccttatagtgtcatataaccttttttttctttaatttcataggagtggttag 646
Query: 446 aaaagaaaaatgtgtatttacatgaaatgcacagaataaaaagaattgaaagcgaaaact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaaagaaaaatgtgtatttacatgaaatgcacagaataaaaagaattgaaagcgaaaact 706
Query: 506 tgaggatccaaaatgaacaggtatcacaaagacagaatcataaaagatagaaatttacat 565
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 707 tgaggatccaaaatgaacaggtatcacaaagacagaatcataaaagatggaattttacat 766
Query: 566 cggcaaaatgtctctgaatatttaatgttagtgaatgaactatttttaagtggtacaatg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cggcaaaatgtctctgaatatttaatgttagtgaatgaactatttttaagtggtacaatg 826
Query: 626 gagatattgaagaactgatttcatctttttagtttgggttcaatctcacttttacattaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gagatattgaagaactgatttcatctttttagtttgggttcaatctcacttttacattaa 886
Query: 686 a 686
|
Sbjct: 887 a 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_k17.g1 MSMg01no483_k17.g1 CHROMAT_FILE:
MSMg01no483_k17.g1 PHD_FILE: MSMg01no483_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:57 2005
(660 letters)
>mm_chr3_82233091_82234151
Length = 1061
Score = 946 bits (489), Expect = 0.0
Identities = 571/617 (92%), Gaps = 32/617 (5%)
Strand = Plus / Minus
Query: 49 tcaggaaatggaggatgtatttttaaaggaggttccagtaagggagatgagggagcagtc 108
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1061 tcaggaaatggaggatgtatttttaaagg-----------agggagatgagggagcagtc 1013
Query: 109 acttgcatggttattagtcctatttttacttctcactttgccagaacaagaaaaatctcc 168
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1012 acttgcatggttattagtcctatttttacttctcactttgcctgaacaagaaaaatctcc 953
Query: 169 tcctttattgtctcatttttaacagctttaagatttgggcatccagcttatattcattca 228
|||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 952 tcctttattgcctcattcttaacagctttaagatttgagcatccagcttatattcattca 893
Query: 229 aac----agccatctctccttcataattaatatccttcttatcttccatcctccttatct 284
||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 892 aacaattagccatctctccttcataattaat----------------atcctccttatct 849
Query: 285 tccttaagcctttaacagtacaaattaatgccaataacccaaaattcaataggactcttt 344
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 848 tccttaagcctttaacagtacaaattaatgccaataacccaaaattgaataggactcttt 789
Query: 345 -ctcccttgtttatgcatcatttcattattctttcagactctcatacttcttcattgaaa 403
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ccccccttgtttatgcatcatttcattattctttcagactctcatacttcttcattgaaa 729
Query: 404 gttcctttttctggaaaccagagaatataatcataaacaacttgcaaggaatctaatagc 463
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 728 gttcttttttctggaaaccagagattataatcataaacaacttgcaaggaatctaatagc 669
Query: 464 tgtggttttaatacttgtgtttctcctttctttaaacaatgatgcaaaagcttgacatat 523
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 668 tgtggttttaatacttgtgtttctcctttctttaaacaatgatgcaaaaggttgacatat 609
Query: 524 gggaaagcctttcctggtttctgcccaattattctttctcacctcctttggtgagggtcc 583
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggaaagcctttccttgtttctgcccaattattctttctcacctcctttggtgagggtct 549
Query: 584 agttttcttatctcatacctgatttcgggtccctgattcatggtgctacttatttatagc 643
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 548 agttttcttaactcatacctgatttcgggtccctgattcattgtgctacttatttatagc 489
Query: 644 tctgaaggtagtaaaac 660
||||| |||||||||||
Sbjct: 488 tctgagggtagtaaaac 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
